miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9417 3' -58.3 NC_002531.1 + 114691 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114720 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114749 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114778 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114807 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114836 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114865 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114894 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114923 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114952 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 114981 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115010 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115039 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115068 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115097 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115126 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115155 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115184 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115213 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5'
9417 3' -58.3 NC_002531.1 + 115242 0.66 0.758759
Target:  5'- --aGGUGGCccCGUC-CCCggGCUGGCu -3'
miRNA:   3'- gucCCACCGuuGCAGuGGG--UGACCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.