miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9417 5' -44.3 NC_002531.1 + 18565 0.66 0.999997
Target:  5'- cGUGAAgaccaugccAGUGgGUGacGUUGCCaCCCUg -3'
miRNA:   3'- aCAUUU---------UCAUgUACaaCAAUGG-GGGG- -5'
9417 5' -44.3 NC_002531.1 + 79231 0.66 0.999997
Target:  5'- gGUGAGGGUugGgcauugaagUGUUG-UGCCCaCUCu -3'
miRNA:   3'- aCAUUUUCAugU---------ACAACaAUGGG-GGG- -5'
9417 5' -44.3 NC_002531.1 + 7740 0.66 0.999997
Target:  5'- gGU-GAAGUAUGUGUgcgUGCCUgCCg -3'
miRNA:   3'- aCAuUUUCAUGUACAacaAUGGGgGG- -5'
9417 5' -44.3 NC_002531.1 + 36906 0.66 0.999994
Target:  5'- gGUGAAGGUAaaaGUGaUGUUcugucugagccuaACCCCUUa -3'
miRNA:   3'- aCAUUUUCAUg--UACaACAA-------------UGGGGGG- -5'
9417 5' -44.3 NC_002531.1 + 31749 0.67 0.999992
Target:  5'- --gGAGGGUugAUGUaucaGCCCUCCa -3'
miRNA:   3'- acaUUUUCAugUACAacaaUGGGGGG- -5'
9417 5' -44.3 NC_002531.1 + 124361 0.67 0.999992
Target:  5'- aGU-AAAGUACAUGgc--UGCCCUCa -3'
miRNA:   3'- aCAuUUUCAUGUACaacaAUGGGGGg -5'
9417 5' -44.3 NC_002531.1 + 95857 0.67 0.999989
Target:  5'- ----cGAGU--GUGUUGUgugUGCCCCCUu -3'
miRNA:   3'- acauuUUCAugUACAACA---AUGGGGGG- -5'
9417 5' -44.3 NC_002531.1 + 13502 0.68 0.999958
Target:  5'- --gGGGAGUACAUGUUGUUgguggcgGCgUCCa -3'
miRNA:   3'- acaUUUUCAUGUACAACAA-------UGgGGGg -5'
9417 5' -44.3 NC_002531.1 + 19313 0.68 0.999925
Target:  5'- uUGUAAGA--GCAUGUUGUacugACUUCCUg -3'
miRNA:   3'- -ACAUUUUcaUGUACAACAa---UGGGGGG- -5'
9417 5' -44.3 NC_002531.1 + 14159 0.68 0.999925
Target:  5'- cGUaAAAAGUACcUGUUuaugACUCCCCu -3'
miRNA:   3'- aCA-UUUUCAUGuACAAcaa-UGGGGGG- -5'
9417 5' -44.3 NC_002531.1 + 17399 0.68 0.999911
Target:  5'- cUGU-GAAGUcacagaaaccgaugcACGUGcUG-UGCCCCCCu -3'
miRNA:   3'- -ACAuUUUCA---------------UGUACaACaAUGGGGGG- -5'
9417 5' -44.3 NC_002531.1 + 40261 0.68 0.999901
Target:  5'- -aUGAGGGggGCGga-UGUUACUCCCCg -3'
miRNA:   3'- acAUUUUCa-UGUacaACAAUGGGGGG- -5'
9417 5' -44.3 NC_002531.1 + 113315 0.69 0.999714
Target:  5'- gUGUAAAAaagACaAUGUUGUaaaGCCCCCa -3'
miRNA:   3'- -ACAUUUUca-UG-UACAACAa--UGGGGGg -5'
9417 5' -44.3 NC_002531.1 + 52088 0.69 0.999714
Target:  5'- --cAAAGGga-GUGUUG-UGCCCCCUc -3'
miRNA:   3'- acaUUUUCaugUACAACaAUGGGGGG- -5'
9417 5' -44.3 NC_002531.1 + 11612 0.74 0.982437
Target:  5'- uUGUuuGGGUACGUGccuuucACCCCCCu -3'
miRNA:   3'- -ACAuuUUCAUGUACaacaa-UGGGGGG- -5'
9417 5' -44.3 NC_002531.1 + 18682 1.15 0.01695
Target:  5'- uUGUAAAAGUACAUGUUGUUACCCCCCu -3'
miRNA:   3'- -ACAUUUUCAUGUACAACAAUGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.