miRNA: 3'- aACC-GGAGuuUGUGGGCUaUCGGaua -5'
miRNA: 3'- aACCGGag--UUUGUGGGCuauCGGAUa -5'
miRNA: 3'- aaCCGGAGUuuGUGGGCUAUCGgaua -5'
miRNA: 3'- aACCGGAGuuuGUGGGCuaUCGGAUa -5'
miRNA: 3'- -AACCGGAGUUUGUGGGCUAUCGGAUA- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 9418 | 3' | -53.5 | NC_002531.1 | + | 124263 | 0.66 | 0.917182 |
|
Target: 5'- aUGGaCCUCu-GCAUCCGGaGGCCg-- -3' miRNA: 3'- aACC-GGAGuuUGUGGGCUaUCGGaua -5' |
|||||||
| 9418 | 3' | -53.5 | NC_002531.1 | + | 34667 | 0.67 | 0.897796 |
|
Target: 5'- gUGGCCggugAGAUACCCGcu-GCCUGg -3' miRNA: 3'- aACCGGag--UUUGUGGGCuauCGGAUa -5' |
|||||||
| 9418 | 3' | -53.5 | NC_002531.1 | + | 39237 | 0.67 | 0.883578 |
|
Target: 5'- -gGGCCUCGu-CAUCUGAUAGCg--- -3' miRNA: 3'- aaCCGGAGUuuGUGGGCUAUCGgaua -5' |
|||||||
| 9418 | 3' | -53.5 | NC_002531.1 | + | 124373 | 0.71 | 0.66499 |
|
Target: 5'- cUGGCCUCu--UGCCUGggGGCCUAc -3' miRNA: 3'- aACCGGAGuuuGUGGGCuaUCGGAUa -5' |
|||||||
| 9418 | 3' | -53.5 | NC_002531.1 | + | 20293 | 1.03 | 0.007572 |
|
Target: 5'- gUUGGCCUCAAACACCCGAUAGCCUAUc -3' miRNA: 3'- -AACCGGAGUUUGUGGGCUAUCGGAUA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home