miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9418 5' -58.8 NC_002531.1 + 42708 0.66 0.760678
Target:  5'- aCAUgacGGCCAGugUaguaaagGCGC-UGGCUGGa -3'
miRNA:   3'- gGUGa--CCGGUCugA-------CGCGuACCGGCU- -5'
9418 5' -58.8 NC_002531.1 + 94023 0.66 0.742514
Target:  5'- -aGCgGGCCAGGCUG-GUggGGCUGu -3'
miRNA:   3'- ggUGaCCGGUCUGACgCGuaCCGGCu -5'
9418 5' -58.8 NC_002531.1 + 65766 0.67 0.71316
Target:  5'- gCGCUGGaCGGGCUGagccaGUcUGGCCGc -3'
miRNA:   3'- gGUGACCgGUCUGACg----CGuACCGGCu -5'
9418 5' -58.8 NC_002531.1 + 82925 0.67 0.703227
Target:  5'- gCugUGGCCcc-CUGUgGCAUGuGCCGAu -3'
miRNA:   3'- gGugACCGGucuGACG-CGUAC-CGGCU- -5'
9418 5' -58.8 NC_002531.1 + 35699 0.68 0.662991
Target:  5'- -gGCUGGCgGGguauguGCUGCGUA-GGCUGGg -3'
miRNA:   3'- ggUGACCGgUC------UGACGCGUaCCGGCU- -5'
9418 5' -58.8 NC_002531.1 + 120257 0.68 0.662991
Target:  5'- gCC-CUGGCgaggaAGACUGCG-AUGGCgGGc -3'
miRNA:   3'- -GGuGACCGg----UCUGACGCgUACCGgCU- -5'
9418 5' -58.8 NC_002531.1 + 57942 0.69 0.581839
Target:  5'- -aGCUGGCCGuccaGCgGCGCGUGGCgGu -3'
miRNA:   3'- ggUGACCGGUc---UGaCGCGUACCGgCu -5'
9418 5' -58.8 NC_002531.1 + 24915 0.69 0.550804
Target:  5'- gCCACUGGUucaCAGG-UGCGCAgcuucacUGGCUGGu -3'
miRNA:   3'- -GGUGACCG---GUCUgACGCGU-------ACCGGCU- -5'
9418 5' -58.8 NC_002531.1 + 21380 0.71 0.474453
Target:  5'- uCUGCUGGCCAGcCUGCugaaaaccuGguUGGCCa- -3'
miRNA:   3'- -GGUGACCGGUCuGACG---------CguACCGGcu -5'
9418 5' -58.8 NC_002531.1 + 20232 0.71 0.474453
Target:  5'- uCCACUGGCCAGGCcuCGCGUGcaCCa- -3'
miRNA:   3'- -GGUGACCGGUCUGacGCGUACc-GGcu -5'
9418 5' -58.8 NC_002531.1 + 20257 1.1 0.001055
Target:  5'- gCCACUGGCCAGACUGCGCAUGGCCGAg -3'
miRNA:   3'- -GGUGACCGGUCUGACGCGUACCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.