miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9419 5' -46.2 NC_002531.1 + 17356 0.66 0.999609
Target:  5'- -cGgGAUGGCUGCUGGgGGgauaucGCAGGa -3'
miRNA:   3'- uaUgUUAUUGACGACUgUCa-----CGUUCa -5'
9419 5' -46.2 NC_002531.1 + 130094 0.67 0.999025
Target:  5'- -aACcAUGACUGCaGACAGaUGCAGa- -3'
miRNA:   3'- uaUGuUAUUGACGaCUGUC-ACGUUca -5'
9419 5' -46.2 NC_002531.1 + 12682 0.67 0.999025
Target:  5'- gGUACucuucuGgUGCUGGCAGaacUGCAGGUa -3'
miRNA:   3'- -UAUGuuau--UgACGACUGUC---ACGUUCA- -5'
9419 5' -46.2 NC_002531.1 + 88653 0.68 0.997365
Target:  5'- uGUACAGgagGGCUGCUGcccuGguGUGUAGGa -3'
miRNA:   3'- -UAUGUUa--UUGACGAC----UguCACGUUCa -5'
9419 5' -46.2 NC_002531.1 + 44792 0.7 0.990311
Target:  5'- uGUACAGUGACgGCcuuugaaacUGGCAGUGCGc-- -3'
miRNA:   3'- -UAUGUUAUUGaCG---------ACUGUCACGUuca -5'
9419 5' -46.2 NC_002531.1 + 89277 0.72 0.966722
Target:  5'- -cACAGaaguUAGCUaCUGGCAGUGCAGGc -3'
miRNA:   3'- uaUGUU----AUUGAcGACUGUCACGUUCa -5'
9419 5' -46.2 NC_002531.1 + 29162 1.07 0.022394
Target:  5'- aAUACAAUAACUGCUGACAGUGCAAGUa -3'
miRNA:   3'- -UAUGUUAUUGACGACUGUCACGUUCA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.