miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9421 5' -53.4 NC_002531.1 + 49632 0.66 0.930129
Target:  5'- --cUGUAggucAGUGCAgcuGGUGGCCgcauagccagcgaGCCUCu -3'
miRNA:   3'- guuACGU----UCACGU---UCACCGGa------------CGGAG- -5'
9421 5' -53.4 NC_002531.1 + 35808 0.66 0.91506
Target:  5'- --cUGCAGGuUGCugauGGUGGCggcuuuCUGCCUg -3'
miRNA:   3'- guuACGUUC-ACGu---UCACCG------GACGGAg -5'
9421 5' -53.4 NC_002531.1 + 74820 0.67 0.908789
Target:  5'- ---gGgAGGUGCAGGU-GCCUGCUg- -3'
miRNA:   3'- guuaCgUUCACGUUCAcCGGACGGag -5'
9421 5' -53.4 NC_002531.1 + 91529 0.67 0.902256
Target:  5'- ------uGGUGCAGaaGGCCUGCCUUg -3'
miRNA:   3'- guuacguUCACGUUcaCCGGACGGAG- -5'
9421 5' -53.4 NC_002531.1 + 129720 0.68 0.841067
Target:  5'- aGGUGCAAGUGgGAGaaguccaaaUGGCCUaggagcucgGCCUa -3'
miRNA:   3'- gUUACGUUCACgUUC---------ACCGGA---------CGGAg -5'
9421 5' -53.4 NC_002531.1 + 29875 0.68 0.832394
Target:  5'- aAAUGCAGGUGaGAGauaGCCUGCUUUa -3'
miRNA:   3'- gUUACGUUCACgUUCac-CGGACGGAG- -5'
9421 5' -53.4 NC_002531.1 + 63981 0.7 0.773484
Target:  5'- aAAUGCAGGUGUuuGUGGUuuuaaaaggaacugCUGCCa- -3'
miRNA:   3'- gUUACGUUCACGuuCACCG--------------GACGGag -5'
9421 5' -53.4 NC_002531.1 + 27639 0.7 0.73613
Target:  5'- ---aGUAAGUGCGAGUaaguacugauGGCUUGUCUUg -3'
miRNA:   3'- guuaCGUUCACGUUCA----------CCGGACGGAG- -5'
9421 5' -53.4 NC_002531.1 + 124834 0.71 0.683571
Target:  5'- gUAAUGCGGGUGgAAGuUGGCaggUGCCUg -3'
miRNA:   3'- -GUUACGUUCACgUUC-ACCGg--ACGGAg -5'
9421 5' -53.4 NC_002531.1 + 36563 0.72 0.640608
Target:  5'- aCAGUGCcuucAAGUGC-AGUcGCCUGCCgUCg -3'
miRNA:   3'- -GUUACG----UUCACGuUCAcCGGACGG-AG- -5'
9421 5' -53.4 NC_002531.1 + 29998 1.1 0.002584
Target:  5'- gCAAUGCAAGUGCAAGUGGCCUGCCUCa -3'
miRNA:   3'- -GUUACGUUCACGUUCACCGGACGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.