miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9423 5' -60 NC_002531.1 + 33840 0.66 0.681263
Target:  5'- gGCUGaaAGCuGgCAUUgACCACCCUAg -3'
miRNA:   3'- aCGACgcUCG-CgGUGAgUGGUGGGAU- -5'
9423 5' -60 NC_002531.1 + 29060 0.66 0.671087
Target:  5'- gUGCucaacaUGCGuGCGCCAaaCACCcCCCUc -3'
miRNA:   3'- -ACG------ACGCuCGCGGUgaGUGGuGGGAu -5'
9423 5' -60 NC_002531.1 + 68032 0.66 0.650647
Target:  5'- aGCaGUGAauGUGCCuucuCUCACCcCCCUGg -3'
miRNA:   3'- aCGaCGCU--CGCGGu---GAGUGGuGGGAU- -5'
9423 5' -60 NC_002531.1 + 113466 0.66 0.64655
Target:  5'- gUGCUGUuuGAGUggcagccgcaccaGCCACUCGCCGCagacggucagccauCCUGa -3'
miRNA:   3'- -ACGACG--CUCG-------------CGGUGAGUGGUG--------------GGAU- -5'
9423 5' -60 NC_002531.1 + 81846 0.66 0.630148
Target:  5'- cUGCUGCGGGCuGUgGCUUuuugggaaGCCuACCCa- -3'
miRNA:   3'- -ACGACGCUCG-CGgUGAG--------UGG-UGGGau -5'
9423 5' -60 NC_002531.1 + 69525 0.67 0.568928
Target:  5'- -----gGGGCGUCGCUUGCCACCCa- -3'
miRNA:   3'- acgacgCUCGCGGUGAGUGGUGGGau -5'
9423 5' -60 NC_002531.1 + 113233 0.67 0.568928
Target:  5'- gUGCUGCG-GCGCgAaaaGCCACCUg- -3'
miRNA:   3'- -ACGACGCuCGCGgUgagUGGUGGGau -5'
9423 5' -60 NC_002531.1 + 113297 0.68 0.547805
Target:  5'- cUGCgGCGAGUggcuggugcggcuGCCACUCAaacagCACCCa- -3'
miRNA:   3'- -ACGaCGCUCG-------------CGGUGAGUg----GUGGGau -5'
9423 5' -60 NC_002531.1 + 82074 0.68 0.52891
Target:  5'- ---aGCGcAGCGCCcCUCugCACCCc- -3'
miRNA:   3'- acgaCGC-UCGCGGuGAGugGUGGGau -5'
9423 5' -60 NC_002531.1 + 103723 0.68 0.519062
Target:  5'- gUGCagGCGccuccGGCGCCGC-CACCACUCc- -3'
miRNA:   3'- -ACGa-CGC-----UCGCGGUGaGUGGUGGGau -5'
9423 5' -60 NC_002531.1 + 100878 0.69 0.489976
Target:  5'- gUGCUGCaGGC-CCAUuuuggaaccaUCGCCACCCa- -3'
miRNA:   3'- -ACGACGcUCGcGGUG----------AGUGGUGGGau -5'
9423 5' -60 NC_002531.1 + 86726 0.75 0.198133
Target:  5'- aGCUGgGGuuucucGCGUCGCUCACCAuCCCUAc -3'
miRNA:   3'- aCGACgCU------CGCGGUGAGUGGU-GGGAU- -5'
9423 5' -60 NC_002531.1 + 32459 1.06 0.001237
Target:  5'- cUGCUGCGAGCGCCACUCACCACCCUAg -3'
miRNA:   3'- -ACGACGCUCGCGGUGAGUGGUGGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.