miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9424 3' -49.5 NC_002531.1 + 11385 0.66 0.997102
Target:  5'- -aGUAUgccGAGGCGGGgGCUuuuUCCCu -3'
miRNA:   3'- ugUAUAaauUUCCGCUCgCGGc--AGGG- -5'
9424 3' -49.5 NC_002531.1 + 58771 0.66 0.997102
Target:  5'- ---aGUUUAAAGGCcuaacAGaCGCCGUCUUu -3'
miRNA:   3'- uguaUAAAUUUCCGc----UC-GCGGCAGGG- -5'
9424 3' -49.5 NC_002531.1 + 84984 0.66 0.994458
Target:  5'- --cUGUgguuuGGCG-GCGCUGUCCUu -3'
miRNA:   3'- uguAUAaauuuCCGCuCGCGGCAGGG- -5'
9424 3' -49.5 NC_002531.1 + 90326 0.67 0.993558
Target:  5'- gUAUGUUUuuuccAGGGGCGAGUGaCUGUCg- -3'
miRNA:   3'- uGUAUAAA-----UUUCCGCUCGC-GGCAGgg -5'
9424 3' -49.5 NC_002531.1 + 24971 0.67 0.993558
Target:  5'- aGCAUAcgucucggGAAGGCagguGAGCGUCGUUgCa -3'
miRNA:   3'- -UGUAUaaa-----UUUCCG----CUCGCGGCAGgG- -5'
9424 3' -49.5 NC_002531.1 + 13496 0.68 0.98716
Target:  5'- uACAUGUUguu-GGUG-GCGgCGUCCa -3'
miRNA:   3'- -UGUAUAAauuuCCGCuCGCgGCAGGg -5'
9424 3' -49.5 NC_002531.1 + 108717 0.68 0.985433
Target:  5'- aGCAguac--AAGaGCGAGgGuuGUCCCa -3'
miRNA:   3'- -UGUauaaauUUC-CGCUCgCggCAGGG- -5'
9424 3' -49.5 NC_002531.1 + 51742 0.68 0.983534
Target:  5'- cGCAUGgu---AGGUGuGGCuGCCGUCUCu -3'
miRNA:   3'- -UGUAUaaauuUCCGC-UCG-CGGCAGGG- -5'
9424 3' -49.5 NC_002531.1 + 120122 0.71 0.939312
Target:  5'- --------cAGGGCGAGUGCCcaGUCCUg -3'
miRNA:   3'- uguauaaauUUCCGCUCGCGG--CAGGG- -5'
9424 3' -49.5 NC_002531.1 + 115862 0.72 0.890814
Target:  5'- uAUGUAggUGGGGGCuGGCcCCGUCCCc -3'
miRNA:   3'- -UGUAUaaAUUUCCGcUCGcGGCAGGG- -5'
9424 3' -49.5 NC_002531.1 + 34611 0.75 0.759463
Target:  5'- ---gAUUUAAGGGCGc-CGCCGUCUCa -3'
miRNA:   3'- uguaUAAAUUUCCGCucGCGGCAGGG- -5'
9424 3' -49.5 NC_002531.1 + 34799 1.14 0.005327
Target:  5'- cACAUAUUUAAAGGCGAGCGCCGUCCCa -3'
miRNA:   3'- -UGUAUAAAUUUCCGCUCGCGGCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.