miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9425 3' -50.4 NC_002531.1 + 54255 0.66 0.992225
Target:  5'- gGC-AGGCGCGccGAAccgcccuaGUGAACCUGGUg -3'
miRNA:   3'- aCGaUCCGUGU--UUUc-------UACUUGGGCCG- -5'
9425 3' -50.4 NC_002531.1 + 11589 0.66 0.992225
Target:  5'- cGUUGGGUACGAAGGcuuccuccaccGUGAcCCCGuGg -3'
miRNA:   3'- aCGAUCCGUGUUUUC-----------UACUuGGGC-Cg -5'
9425 3' -50.4 NC_002531.1 + 103431 0.66 0.992225
Target:  5'- -cCUGGGCugGAGgccuggccuccAGAguuaucaGACCCGGCu -3'
miRNA:   3'- acGAUCCGugUUU-----------UCUac-----UUGGGCCG- -5'
9425 3' -50.4 NC_002531.1 + 12466 0.66 0.991048
Target:  5'- -aUUGGGCuCAAcuuuggaauuaGGGAUGGggGCCUGGCg -3'
miRNA:   3'- acGAUCCGuGUU-----------UUCUACU--UGGGCCG- -5'
9425 3' -50.4 NC_002531.1 + 44077 0.66 0.989735
Target:  5'- aGCcauggAGGCGgGGAAGAUGucagucaCUGGCa -3'
miRNA:   3'- aCGa----UCCGUgUUUUCUACuug----GGCCG- -5'
9425 3' -50.4 NC_002531.1 + 6310 0.66 0.989735
Target:  5'- uUGCUAaaUGCAGcAAGAUGAucACCCGGg -3'
miRNA:   3'- -ACGAUccGUGUU-UUCUACU--UGGGCCg -5'
9425 3' -50.4 NC_002531.1 + 40271 0.66 0.988277
Target:  5'- gGCU-GGUACGAuGAGggGGGcggauguuacucCCCGGCg -3'
miRNA:   3'- aCGAuCCGUGUU-UUCuaCUU------------GGGCCG- -5'
9425 3' -50.4 NC_002531.1 + 121757 0.66 0.986662
Target:  5'- aGgaGGGCGC---GGA-GAGCCgGGCu -3'
miRNA:   3'- aCgaUCCGUGuuuUCUaCUUGGgCCG- -5'
9425 3' -50.4 NC_002531.1 + 67187 0.66 0.986662
Target:  5'- aUGCagUAGGUugAGAAGGgcaggcggGGGCCCaGGUc -3'
miRNA:   3'- -ACG--AUCCGugUUUUCUa-------CUUGGG-CCG- -5'
9425 3' -50.4 NC_002531.1 + 15351 0.67 0.984882
Target:  5'- gUGCgAGGCACAGGGGAUauACCUcucaGCu -3'
miRNA:   3'- -ACGaUCCGUGUUUUCUAcuUGGGc---CG- -5'
9425 3' -50.4 NC_002531.1 + 108564 0.67 0.978452
Target:  5'- uUGCUGGGC-Cu--GGGUGAAUCCa-- -3'
miRNA:   3'- -ACGAUCCGuGuuuUCUACUUGGGccg -5'
9425 3' -50.4 NC_002531.1 + 82878 0.68 0.966995
Target:  5'- aGUUuaGGGguCu---GAUGGACCUGGCg -3'
miRNA:   3'- aCGA--UCCguGuuuuCUACUUGGGCCG- -5'
9425 3' -50.4 NC_002531.1 + 9569 0.68 0.959885
Target:  5'- ---cAGGCGC-GAAGAUGcugcACCUGGCu -3'
miRNA:   3'- acgaUCCGUGuUUUCUACu---UGGGCCG- -5'
9425 3' -50.4 NC_002531.1 + 38478 0.69 0.94735
Target:  5'- gGCagAGGUuCAAGGGGgucAACCCGGCc -3'
miRNA:   3'- aCGa-UCCGuGUUUUCUac-UUGGGCCG- -5'
9425 3' -50.4 NC_002531.1 + 59847 0.69 0.942655
Target:  5'- gUGC-AGGCguGCAcuGAGAUGAgaccccacAUCCGGCa -3'
miRNA:   3'- -ACGaUCCG--UGUu-UUCUACU--------UGGGCCG- -5'
9425 3' -50.4 NC_002531.1 + 34839 0.7 0.908893
Target:  5'- gGCUcaGGGacuggaaGCGAGAGA-GGACCCaGGCg -3'
miRNA:   3'- aCGA--UCCg------UGUUUUCUaCUUGGG-CCG- -5'
9425 3' -50.4 NC_002531.1 + 88881 0.71 0.902334
Target:  5'- cUGUUgAGGguCAAGGGAgUGAuGCCCGGUg -3'
miRNA:   3'- -ACGA-UCCguGUUUUCU-ACU-UGGGCCG- -5'
9425 3' -50.4 NC_002531.1 + 12604 0.71 0.872757
Target:  5'- gGCUAGGUGCuGGAGGGUGAaagagcuGCCaucgaGGCu -3'
miRNA:   3'- aCGAUCCGUG-UUUUCUACU-------UGGg----CCG- -5'
9425 3' -50.4 NC_002531.1 + 98216 0.73 0.814108
Target:  5'- -uCUGGGCcCAGGAGAgu--CCCGGCa -3'
miRNA:   3'- acGAUCCGuGUUUUCUacuuGGGCCG- -5'
9425 3' -50.4 NC_002531.1 + 24383 0.75 0.708137
Target:  5'- aUGCUGGGC-CAGAAGAcUGcccgccuaaccuuuaGACCCGGg -3'
miRNA:   3'- -ACGAUCCGuGUUUUCU-AC---------------UUGGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.