miRNA: 3'- aGUGGUGUaua-GGGACACAcGGAACC- -5'
miRNA: 3'- aGUGGUGu--AU---AGGGaCACACGGAAcc -5'
miRNA: 3'- -AGUGGUGUAUAGGGACACACGGAACC- -5'
Results 1 - 3 of 3 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 9425 | 5' | -51.5 | NC_002531.1 | + | 74277 | 0.66 | 0.98688 |
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Target: 5'- aCACUGCAgcaaCUCUGUGUcUCUUGGg -3' miRNA: 3'- aGUGGUGUaua-GGGACACAcGGAACC- -5' |
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| 9425 | 5' | -51.5 | NC_002531.1 | + | 129832 | 0.68 | 0.953122 |
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Target: 5'- cCACUACucuUGcucUCCCcGUGUGCCUUa- -3' miRNA: 3'- aGUGGUGu--AU---AGGGaCACACGGAAcc -5' |
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| 9425 | 5' | -51.5 | NC_002531.1 | + | 35069 | 1.13 | 0.003769 |
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Target: 5'- uUCACCACAUAUCCCUGUGUGCCUUGGg -3' miRNA: 3'- -AGUGGUGUAUAGGGACACACGGAACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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