Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 9426 | 3' | -58.1 | NC_002531.1 | + | 93270 | 0.67 | 0.700663 |
|
Target: 5'- gGCcuACCGaccgGGCCUuACcaGCUCCCCAAu -3' miRNA: 3'- aCG--UGGCa---CCGGGuUG--UGAGGGGUUu -5' |
|||||||
| 9426 | 3' | -58.1 | NC_002531.1 | + | 18866 | 0.67 | 0.69045 |
|
Target: 5'- aGCAgUGUGGCC--ACACUCUUCAGc -3' miRNA: 3'- aCGUgGCACCGGguUGUGAGGGGUUu -5' |
|||||||
| 9426 | 3' | -58.1 | NC_002531.1 | + | 77603 | 0.67 | 0.69045 |
|
Target: 5'- gUGCAguCCGUGGaCCCGACAgaCaCUCAAGa -3' miRNA: 3'- -ACGU--GGCACC-GGGUUGUgaG-GGGUUU- -5' |
|||||||
| 9426 | 3' | -58.1 | NC_002531.1 | + | 82512 | 0.68 | 0.649191 |
|
Target: 5'- aGaCugCGUGGCCaCGGCcccgaGCUCCCgGAGg -3' miRNA: 3'- aC-GugGCACCGG-GUUG-----UGAGGGgUUU- -5' |
|||||||
| 9426 | 3' | -58.1 | NC_002531.1 | + | 82362 | 0.7 | 0.516126 |
|
Target: 5'- gGgGCCGUGGCCacGCAgUCUCCAGc -3' miRNA: 3'- aCgUGGCACCGGguUGUgAGGGGUUu -5' |
|||||||
| 9426 | 3' | -58.1 | NC_002531.1 | + | 65267 | 0.72 | 0.378411 |
|
Target: 5'- -uCugCGUGGCCUgcaACUCCCCAGAu -3' miRNA: 3'- acGugGCACCGGGuugUGAGGGGUUU- -5' |
|||||||
| 9426 | 3' | -58.1 | NC_002531.1 | + | 35212 | 1.06 | 0.00194 |
|
Target: 5'- gUGCACCGUGGCCCAACACUCCCCAAAg -3' miRNA: 3'- -ACGUGGCACCGGGUUGUGAGGGGUUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home