miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9427 3' -57.8 NC_002531.1 + 93090 0.66 0.820379
Target:  5'- -aACGGCgCU-CUUGAGCAGGugaaGACACu -3'
miRNA:   3'- ggUGCCG-GAgGGACUCGUCC----UUGUGc -5'
9427 3' -57.8 NC_002531.1 + 35780 0.66 0.794141
Target:  5'- gCC-CGGCCUC--UGAG-AGGAGCAUGu -3'
miRNA:   3'- -GGuGCCGGAGggACUCgUCCUUGUGC- -5'
9427 3' -57.8 NC_002531.1 + 102763 0.67 0.775917
Target:  5'- cCCAUcuuuaGGCCUCUCUGGGCGGuccuGCAg- -3'
miRNA:   3'- -GGUG-----CCGGAGGGACUCGUCcu--UGUgc -5'
9427 3' -57.8 NC_002531.1 + 106895 0.67 0.775917
Target:  5'- gCugGGUCUCCU--GGCAGGAAaGCu -3'
miRNA:   3'- gGugCCGGAGGGacUCGUCCUUgUGc -5'
9427 3' -57.8 NC_002531.1 + 84943 0.67 0.756239
Target:  5'- --gUGGUCUCCUUGAGCgagcggaGGGAGCGgGc -3'
miRNA:   3'- gguGCCGGAGGGACUCG-------UCCUUGUgC- -5'
9427 3' -57.8 NC_002531.1 + 42402 0.68 0.718497
Target:  5'- gCAUGGCCUUUgUGAGCAuGGGAUcuguguuggACGa -3'
miRNA:   3'- gGUGCCGGAGGgACUCGU-CCUUG---------UGC- -5'
9427 3' -57.8 NC_002531.1 + 78210 0.69 0.628039
Target:  5'- uCCuugUGGCCUUCUaGAGCGGGAauuugagccaGCACGu -3'
miRNA:   3'- -GGu--GCCGGAGGGaCUCGUCCU----------UGUGC- -5'
9427 3' -57.8 NC_002531.1 + 35001 0.73 0.446829
Target:  5'- gCCugGGUCcucucucgcuuccagUCCCUGAGCcGGGACgACGu -3'
miRNA:   3'- -GGugCCGG---------------AGGGACUCGuCCUUG-UGC- -5'
9427 3' -57.8 NC_002531.1 + 35655 1.1 0.001599
Target:  5'- gCCACGGCCUCCCUGAGCAGGAACACGu -3'
miRNA:   3'- -GGUGCCGGAGGGACUCGUCCUUGUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.