miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9428 5' -53.7 NC_002531.1 + 113269 0.66 0.943349
Target:  5'- uGGCAGGAauaucaggauGGCUG--ACCGUCuGCGGCg -3'
miRNA:   3'- -CCGUCUU----------UCGGCggUGGUAGuCGUUG- -5'
9428 5' -53.7 NC_002531.1 + 83555 0.66 0.943349
Target:  5'- cGUAGAAGGCCGCCAgC-UC-GCcuCg -3'
miRNA:   3'- cCGUCUUUCGGCGGUgGuAGuCGuuG- -5'
9428 5' -53.7 NC_002531.1 + 11548 0.66 0.942878
Target:  5'- aGCGGGAgggaaaaAGCCcCCGCC-UCGGCAu- -3'
miRNA:   3'- cCGUCUU-------UCGGcGGUGGuAGUCGUug -5'
9428 5' -53.7 NC_002531.1 + 83047 0.66 0.933442
Target:  5'- cGGUccguGAuGGCCGCCAgguCCAUCAGaccccuaAACu -3'
miRNA:   3'- -CCGu---CUuUCGGCGGU---GGUAGUCg------UUG- -5'
9428 5' -53.7 NC_002531.1 + 54405 0.66 0.933442
Target:  5'- gGGCGGuucGGCgCGCCugCcgGUUAGCGGg -3'
miRNA:   3'- -CCGUCuu-UCG-GCGGugG--UAGUCGUUg -5'
9428 5' -53.7 NC_002531.1 + 56363 0.66 0.933442
Target:  5'- uGGaUAGuu-GUgGCCAUCAUCAGCAu- -3'
miRNA:   3'- -CC-GUCuuuCGgCGGUGGUAGUCGUug -5'
9428 5' -53.7 NC_002531.1 + 68764 0.66 0.922507
Target:  5'- uGGCAucuGAuaucucguGGCUGCCuCCAUuCGGCAAUg -3'
miRNA:   3'- -CCGU---CUu-------UCGGCGGuGGUA-GUCGUUG- -5'
9428 5' -53.7 NC_002531.1 + 42707 0.67 0.916653
Target:  5'- uGCAGAgcGCCuGCCACCccUGGCuGACg -3'
miRNA:   3'- cCGUCUuuCGG-CGGUGGuaGUCG-UUG- -5'
9428 5' -53.7 NC_002531.1 + 7244 0.68 0.87623
Target:  5'- uGUGGAugGGGCCaGCaagaACUGUCAGCAACu -3'
miRNA:   3'- cCGUCU--UUCGG-CGg---UGGUAGUCGUUG- -5'
9428 5' -53.7 NC_002531.1 + 122969 0.68 0.860827
Target:  5'- aGGCcccguugcugGGAGAcGCgGCCACCuUCAGgGGCu -3'
miRNA:   3'- -CCG----------UCUUU-CGgCGGUGGuAGUCgUUG- -5'
9428 5' -53.7 NC_002531.1 + 122423 0.68 0.844535
Target:  5'- aGGCAGAGcuCCGCCACgCA--GGCcACg -3'
miRNA:   3'- -CCGUCUUucGGCGGUG-GUagUCGuUG- -5'
9428 5' -53.7 NC_002531.1 + 19954 0.69 0.827411
Target:  5'- aGGgGGuauGCUGUCACaccuGUCAGCAGCa -3'
miRNA:   3'- -CCgUCuuuCGGCGGUGg---UAGUCGUUG- -5'
9428 5' -53.7 NC_002531.1 + 41272 0.69 0.818558
Target:  5'- aGCAGAAAGCCuGUUaauGCCAUCAGaaucaaAGCc -3'
miRNA:   3'- cCGUCUUUCGG-CGG---UGGUAGUCg-----UUG- -5'
9428 5' -53.7 NC_002531.1 + 54668 0.69 0.800312
Target:  5'- uGGguGAAAGCCGCUgugGCUAcUCAGUcccggaAACa -3'
miRNA:   3'- -CCguCUUUCGGCGG---UGGU-AGUCG------UUG- -5'
9428 5' -53.7 NC_002531.1 + 74447 0.69 0.800312
Target:  5'- -cCAGuAAGCCuGCgACCAgccgCAGCAGCa -3'
miRNA:   3'- ccGUCuUUCGG-CGgUGGUa---GUCGUUG- -5'
9428 5' -53.7 NC_002531.1 + 69326 0.71 0.73181
Target:  5'- uGCAGAgcGCCGCCACgAUguGUuuGCu -3'
miRNA:   3'- cCGUCUuuCGGCGGUGgUAguCGu-UG- -5'
9428 5' -53.7 NC_002531.1 + 47411 0.71 0.690391
Target:  5'- aGCccuGAAGGCCGCC-UCuUCGGCAGCc -3'
miRNA:   3'- cCGu--CUUUCGGCGGuGGuAGUCGUUG- -5'
9428 5' -53.7 NC_002531.1 + 97963 0.72 0.658741
Target:  5'- aGGUAGAGAGCauguuacagGCCGCCAagUCAGaacaGACa -3'
miRNA:   3'- -CCGUCUUUCGg--------CGGUGGU--AGUCg---UUG- -5'
9428 5' -53.7 NC_002531.1 + 8983 0.73 0.604592
Target:  5'- aGGCAGAAaaccuAGCUcucucugGCCACgauGUCAGCGACg -3'
miRNA:   3'- -CCGUCUU-----UCGG-------CGGUGg--UAGUCGUUG- -5'
9428 5' -53.7 NC_002531.1 + 35969 1.11 0.00242
Target:  5'- aGGCAGAAAGCCGCCACCAUCAGCAACc -3'
miRNA:   3'- -CCGUCUUUCGGCGGUGGUAGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.