miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9430 5' -50 NC_002531.1 + 30228 0.66 0.994324
Target:  5'- uACGuaGCUCCACgGAGU-CCUG-GCuGCg -3'
miRNA:   3'- -UGC--UGAGGUGgUUUAuGGACuCGuUG- -5'
9430 5' -50 NC_002531.1 + 11864 0.66 0.993401
Target:  5'- -aGGCUCUACC---UGCCUGcGGuCAGCg -3'
miRNA:   3'- ugCUGAGGUGGuuuAUGGAC-UC-GUUG- -5'
9430 5' -50 NC_002531.1 + 18149 0.66 0.992792
Target:  5'- aACGugUUggaagagcuaucccgCGCguGGUGCCgUGAGCAGCa -3'
miRNA:   3'- -UGCugAG---------------GUGguUUAUGG-ACUCGUUG- -5'
9430 5' -50 NC_002531.1 + 38262 0.66 0.992471
Target:  5'- -aGGCUauugagggcagcacaCGCCGAuUGCCcGAGCAGCg -3'
miRNA:   3'- ugCUGAg--------------GUGGUUuAUGGaCUCGUUG- -5'
9430 5' -50 NC_002531.1 + 9826 0.66 0.989893
Target:  5'- -aGACUCCuuuucuucuACCAAAUGCCagcagGAGguAUg -3'
miRNA:   3'- ugCUGAGG---------UGGUUUAUGGa----CUCguUG- -5'
9430 5' -50 NC_002531.1 + 130097 0.66 0.989893
Target:  5'- cAUGACUgCAgaCAGAUGCa-GAGCAACu -3'
miRNA:   3'- -UGCUGAgGUg-GUUUAUGgaCUCGUUG- -5'
9430 5' -50 NC_002531.1 + 67881 0.67 0.98798
Target:  5'- cGCGGCUCUuucuaucCCAcucagaggugaagcAGUACCUGGGCucacuGCa -3'
miRNA:   3'- -UGCUGAGGu------GGU--------------UUAUGGACUCGu----UG- -5'
9430 5' -50 NC_002531.1 + 55327 0.67 0.986841
Target:  5'- -gGACccagagCCACCAAauguuAUACCUGAG-AACa -3'
miRNA:   3'- ugCUGa-----GGUGGUU-----UAUGGACUCgUUG- -5'
9430 5' -50 NC_002531.1 + 71661 0.67 0.986841
Target:  5'- aAC-ACUUCACCuugucuuaagcAAGUGUCUGAGCAGCa -3'
miRNA:   3'- -UGcUGAGGUGG-----------UUUAUGGACUCGUUG- -5'
9430 5' -50 NC_002531.1 + 129986 0.67 0.983124
Target:  5'- uACGugcuacCUCCACCuu-UACCUGAuaGUGACg -3'
miRNA:   3'- -UGCu-----GAGGUGGuuuAUGGACU--CGUUG- -5'
9430 5' -50 NC_002531.1 + 115781 0.69 0.952009
Target:  5'- -aGACUCCAgCCAGAUAauuucacccggUCUGAGUAGg -3'
miRNA:   3'- ugCUGAGGU-GGUUUAU-----------GGACUCGUUg -5'
9430 5' -50 NC_002531.1 + 103087 0.7 0.9414
Target:  5'- gACGGCUUCAaugauuggugguUGCCUGAGUAACa -3'
miRNA:   3'- -UGCUGAGGUgguuu-------AUGGACUCGUUG- -5'
9430 5' -50 NC_002531.1 + 81342 0.72 0.881094
Target:  5'- cACG-CUCUACCAgaagcAGUGCCUGAGaAACc -3'
miRNA:   3'- -UGCuGAGGUGGU-----UUAUGGACUCgUUG- -5'
9430 5' -50 NC_002531.1 + 38087 1.11 0.006444
Target:  5'- uACGACUCCACCAAAUACCUGAGCAACa -3'
miRNA:   3'- -UGCUGAGGUGGUUUAUGGACUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.