miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9433 5' -57.4 NC_002531.1 + 73650 0.66 0.794514
Target:  5'- cGCUAaacauUCUCCcuugguucaaagcuuUCCCCcUGGCUUCGGa -3'
miRNA:   3'- aCGGU-----AGAGGu--------------AGGGGaACCGAGGUC- -5'
9433 5' -57.4 NC_002531.1 + 118908 0.66 0.793598
Target:  5'- gGCUAUCUCCuucaggCCCCUcUGGUcCCu- -3'
miRNA:   3'- aCGGUAGAGGua----GGGGA-ACCGaGGuc -5'
9433 5' -57.4 NC_002531.1 + 71543 0.66 0.784357
Target:  5'- gGCaGUCUCCuUCCCCUuugucUGGUgagCCAa -3'
miRNA:   3'- aCGgUAGAGGuAGGGGA-----ACCGa--GGUc -5'
9433 5' -57.4 NC_002531.1 + 8048 0.66 0.784357
Target:  5'- aGCCcUCggagggCaCAgaagauacaCCCUUGGCUCCAGa -3'
miRNA:   3'- aCGGuAGa-----G-GUag-------GGGAACCGAGGUC- -5'
9433 5' -57.4 NC_002531.1 + 119136 0.66 0.774976
Target:  5'- gGCUAUCUCCuucaggCCCCUcUGGUcccUCgGGg -3'
miRNA:   3'- aCGGUAGAGGua----GGGGA-ACCG---AGgUC- -5'
9433 5' -57.4 NC_002531.1 + 117048 0.68 0.706181
Target:  5'- aGCCAggggcCUCCAacucuaagUCCCCaaGGUuuUCCAGg -3'
miRNA:   3'- aCGGUa----GAGGU--------AGGGGaaCCG--AGGUC- -5'
9433 5' -57.4 NC_002531.1 + 118717 0.68 0.675545
Target:  5'- gGCCuUCUCCuucaggCCCCUcUGGuCUCuCAGg -3'
miRNA:   3'- aCGGuAGAGGua----GGGGA-ACC-GAG-GUC- -5'
9433 5' -57.4 NC_002531.1 + 8771 0.69 0.613525
Target:  5'- uUGCCAcagCCAaugcCCCCUgugUGGUUCCAGg -3'
miRNA:   3'- -ACGGUagaGGUa---GGGGA---ACCGAGGUC- -5'
9433 5' -57.4 NC_002531.1 + 124568 0.7 0.57235
Target:  5'- cUGCCAaacgUCUCCAUCCCCUcuacaucGGUagCCAc -3'
miRNA:   3'- -ACGGU----AGAGGUAGGGGAa------CCGa-GGUc -5'
9433 5' -57.4 NC_002531.1 + 118270 0.73 0.392
Target:  5'- gGCUAUCUCCuucaggCCCCUcUGGUUCCu- -3'
miRNA:   3'- aCGGUAGAGGua----GGGGA-ACCGAGGuc -5'
9433 5' -57.4 NC_002531.1 + 43019 1.09 0.001425
Target:  5'- aUGCCAUCUCCAUCCCCUUGGCUCCAGg -3'
miRNA:   3'- -ACGGUAGAGGUAGGGGAACCGAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.