Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9433 | 5' | -57.4 | NC_002531.1 | + | 8048 | 0.66 | 0.784357 |
Target: 5'- aGCCcUCggagggCaCAgaagauacaCCCUUGGCUCCAGa -3' miRNA: 3'- aCGGuAGa-----G-GUag-------GGGAACCGAGGUC- -5' |
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9433 | 5' | -57.4 | NC_002531.1 | + | 8771 | 0.69 | 0.613525 |
Target: 5'- uUGCCAcagCCAaugcCCCCUgugUGGUUCCAGg -3' miRNA: 3'- -ACGGUagaGGUa---GGGGA---ACCGAGGUC- -5' |
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9433 | 5' | -57.4 | NC_002531.1 | + | 43019 | 1.09 | 0.001425 |
Target: 5'- aUGCCAUCUCCAUCCCCUUGGCUCCAGg -3' miRNA: 3'- -ACGGUAGAGGUAGGGGAACCGAGGUC- -5' |
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9433 | 5' | -57.4 | NC_002531.1 | + | 71543 | 0.66 | 0.784357 |
Target: 5'- gGCaGUCUCCuUCCCCUuugucUGGUgagCCAa -3' miRNA: 3'- aCGgUAGAGGuAGGGGA-----ACCGa--GGUc -5' |
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9433 | 5' | -57.4 | NC_002531.1 | + | 73650 | 0.66 | 0.794514 |
Target: 5'- cGCUAaacauUCUCCcuugguucaaagcuuUCCCCcUGGCUUCGGa -3' miRNA: 3'- aCGGU-----AGAGGu--------------AGGGGaACCGAGGUC- -5' |
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9433 | 5' | -57.4 | NC_002531.1 | + | 117048 | 0.68 | 0.706181 |
Target: 5'- aGCCAggggcCUCCAacucuaagUCCCCaaGGUuuUCCAGg -3' miRNA: 3'- aCGGUa----GAGGU--------AGGGGaaCCG--AGGUC- -5' |
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9433 | 5' | -57.4 | NC_002531.1 | + | 118270 | 0.73 | 0.392 |
Target: 5'- gGCUAUCUCCuucaggCCCCUcUGGUUCCu- -3' miRNA: 3'- aCGGUAGAGGua----GGGGA-ACCGAGGuc -5' |
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9433 | 5' | -57.4 | NC_002531.1 | + | 118717 | 0.68 | 0.675545 |
Target: 5'- gGCCuUCUCCuucaggCCCCUcUGGuCUCuCAGg -3' miRNA: 3'- aCGGuAGAGGua----GGGGA-ACC-GAG-GUC- -5' |
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9433 | 5' | -57.4 | NC_002531.1 | + | 118908 | 0.66 | 0.793598 |
Target: 5'- gGCUAUCUCCuucaggCCCCUcUGGUcCCu- -3' miRNA: 3'- aCGGUAGAGGua----GGGGA-ACCGaGGuc -5' |
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9433 | 5' | -57.4 | NC_002531.1 | + | 119136 | 0.66 | 0.774976 |
Target: 5'- gGCUAUCUCCuucaggCCCCUcUGGUcccUCgGGg -3' miRNA: 3'- aCGGUAGAGGua----GGGGA-ACCG---AGgUC- -5' |
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9433 | 5' | -57.4 | NC_002531.1 | + | 124568 | 0.7 | 0.57235 |
Target: 5'- cUGCCAaacgUCUCCAUCCCCUcuacaucGGUagCCAc -3' miRNA: 3'- -ACGGU----AGAGGUAGGGGAa------CCGa-GGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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