Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9434 | 3' | -51.6 | NC_002531.1 | + | 66163 | 0.66 | 0.986203 |
Target: 5'- aGGCgcUGcacGGGGCUGUuGAacaccacuuUUCCAGa -3' miRNA: 3'- -CCGaaACu--CCCCGACAuCU---------AAGGUCc -5' |
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9434 | 3' | -51.6 | NC_002531.1 | + | 103778 | 0.66 | 0.986203 |
Target: 5'- uGGUugaaUUUGGGGGcGCUGcc---UCCAGGg -3' miRNA: 3'- -CCG----AAACUCCC-CGACaucuaAGGUCC- -5' |
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9434 | 3' | -51.6 | NC_002531.1 | + | 119252 | 0.67 | 0.975445 |
Target: 5'- uGCUcaaGAGGGGCccgAGGgaCCAGGg -3' miRNA: 3'- cCGAaa-CUCCCCGacaUCUaaGGUCC- -5' |
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9434 | 3' | -51.6 | NC_002531.1 | + | 119438 | 0.67 | 0.975445 |
Target: 5'- uGCUcaaGAGGGGCccgAGGgaCCAGGg -3' miRNA: 3'- cCGAaa-CUCCCCGacaUCUaaGGUCC- -5' |
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9434 | 3' | -51.6 | NC_002531.1 | + | 96533 | 0.67 | 0.96659 |
Target: 5'- cGGCUggUGGGaGGG-UGUGGGUUUUAGa -3' miRNA: 3'- -CCGAa-ACUC-CCCgACAUCUAAGGUCc -5' |
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9434 | 3' | -51.6 | NC_002531.1 | + | 11447 | 0.68 | 0.95569 |
Target: 5'- gGGCccaauAGGGGCUuUAGAgcCCAGGu -3' miRNA: 3'- -CCGaaac-UCCCCGAcAUCUaaGGUCC- -5' |
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9434 | 3' | -51.6 | NC_002531.1 | + | 47127 | 0.69 | 0.915673 |
Target: 5'- aGGCgcu--GGGGCUGUuGAcUCUGGGg -3' miRNA: 3'- -CCGaaacuCCCCGACAuCUaAGGUCC- -5' |
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9434 | 3' | -51.6 | NC_002531.1 | + | 99775 | 0.69 | 0.909517 |
Target: 5'- aGGCU-UGGGGGGCag-AGAgucUCCAGu -3' miRNA: 3'- -CCGAaACUCCCCGacaUCUa--AGGUCc -5' |
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9434 | 3' | -51.6 | NC_002531.1 | + | 34539 | 0.7 | 0.882372 |
Target: 5'- cGUccUGGGGGGCgggGGGUgcUCCAGGg -3' miRNA: 3'- cCGaaACUCCCCGacaUCUA--AGGUCC- -5' |
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9434 | 3' | -51.6 | NC_002531.1 | + | 49521 | 1.14 | 0.003019 |
Target: 5'- uGGCUUUGAGGGGCUGUAGAUUCCAGGg -3' miRNA: 3'- -CCGAAACUCCCCGACAUCUAAGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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