Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9434 | 5' | -48.9 | NC_002531.1 | + | 49479 | 1.11 | 0.008482 |
Target: 5'- gUACCUAGAACCAUAUAGCACAUCCCCc -3' miRNA: 3'- -AUGGAUCUUGGUAUAUCGUGUAGGGG- -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 48533 | 0.79 | 0.57441 |
Target: 5'- cACCUGGAAUCAUggcagacuaugccgaGUGGCACAaggCCCCc -3' miRNA: 3'- aUGGAUCUUGGUA---------------UAUCGUGUa--GGGG- -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 95857 | 0.74 | 0.822323 |
Target: 5'- aGCCUguccaguguAGAGCCAUGUaggAGCACAUCgUCu -3' miRNA: 3'- aUGGA---------UCUUGGUAUA---UCGUGUAGgGG- -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 12837 | 0.7 | 0.95246 |
Target: 5'- cGCCUAGAcCCcUGUAGCACcggggggaaccgGUCCUUa -3' miRNA: 3'- aUGGAUCUuGGuAUAUCGUG------------UAGGGG- -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 109317 | 0.7 | 0.964261 |
Target: 5'- aGCCcAGAGCCAcaccacaaUAUAGCACAUgUUCu -3' miRNA: 3'- aUGGaUCUUGGU--------AUAUCGUGUAgGGG- -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 66678 | 0.69 | 0.967692 |
Target: 5'- aUACUUuau-CCAguccUGUAGCACAUCCUCg -3' miRNA: 3'- -AUGGAucuuGGU----AUAUCGUGUAGGGG- -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 41214 | 0.69 | 0.976575 |
Target: 5'- cACCUGuGGACCAUGUcaaAGCAUAcauuggCCUCg -3' miRNA: 3'- aUGGAU-CUUGGUAUA---UCGUGUa-----GGGG- -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 62865 | 0.68 | 0.980732 |
Target: 5'- gGCCcucAGAGCCAUcucccAGCGCAuaaaguugagaaugUCCCCa -3' miRNA: 3'- aUGGa--UCUUGGUAua---UCGUGU--------------AGGGG- -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 101069 | 0.68 | 0.981182 |
Target: 5'- cUAUCUAGAcaccccaGCUAacUcgAGCgACAUCCCCg -3' miRNA: 3'- -AUGGAUCU-------UGGU--AuaUCG-UGUAGGGG- -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 80691 | 0.68 | 0.981405 |
Target: 5'- gGCCUGGcAGCCAag-GGCcucaGCAUCaCCCc -3' miRNA: 3'- aUGGAUC-UUGGUauaUCG----UGUAG-GGG- -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 14128 | 0.68 | 0.981405 |
Target: 5'- gGCCUGGAGCgAgcaagGUuggcGGCAgAUUCCCu -3' miRNA: 3'- aUGGAUCUUGgUa----UA----UCGUgUAGGGG- -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 8083 | 0.68 | 0.98878 |
Target: 5'- -uCCUAGGAUauggaaAGgGCAUCCCCa -3' miRNA: 3'- auGGAUCUUGguaua-UCgUGUAGGGG- -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 8361 | 0.68 | 0.98878 |
Target: 5'- gGCUgcuGGGCUAUGUGGC-CAUUUCCa -3' miRNA: 3'- aUGGau-CUUGGUAUAUCGuGUAGGGG- -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 115660 | 0.67 | 0.990207 |
Target: 5'- gGgCUGGcuGGCUAgGUGGCcCGUCCCCg -3' miRNA: 3'- aUgGAUC--UUGGUaUAUCGuGUAGGGG- -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 76691 | 0.67 | 0.990207 |
Target: 5'- --aUUAGGGCCAUGUA-CAUAcCCCCa -3' miRNA: 3'- augGAUCUUGGUAUAUcGUGUaGGGG- -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 4651 | 0.67 | 0.990207 |
Target: 5'- cAUgaAGAACCAUc-AGCAUGUUCCCa -3' miRNA: 3'- aUGgaUCUUGGUAuaUCGUGUAGGGG- -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 75418 | 0.67 | 0.990207 |
Target: 5'- aGCCUGGAAagggaCAggaGUAGUagugGCAUCCCa -3' miRNA: 3'- aUGGAUCUUg----GUa--UAUCG----UGUAGGGg -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 89661 | 0.67 | 0.991488 |
Target: 5'- -uUCUGGAAaCAg--GGcCACGUCCCCa -3' miRNA: 3'- auGGAUCUUgGUauaUC-GUGUAGGGG- -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 46458 | 0.67 | 0.992632 |
Target: 5'- cUGCCUGGGAgUGgcUAGCGCcUCCgCCu -3' miRNA: 3'- -AUGGAUCUUgGUauAUCGUGuAGG-GG- -5' |
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9434 | 5' | -48.9 | NC_002531.1 | + | 103109 | 0.67 | 0.993358 |
Target: 5'- uUGCagaUAGGGCCucccucGUAGCACcacgcccuccauucAUCCCCa -3' miRNA: 3'- -AUGg--AUCUUGGua----UAUCGUG--------------UAGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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