miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9435 5' -63.1 NC_002531.1 + 55912 0.66 0.499376
Target:  5'- -uCCCCCUGGCUGcuuuuuggccuguCCCACCUUgUGAg -3'
miRNA:   3'- auGGGGGGUCGAU-------------GGGUGGGGgACUa -5'
9435 5' -63.1 NC_002531.1 + 38966 0.66 0.490876
Target:  5'- aGCCCCUUgAGCca-CCGCCCCaCUGAg -3'
miRNA:   3'- aUGGGGGG-UCGaugGGUGGGG-GACUa -5'
9435 5' -63.1 NC_002531.1 + 93872 0.67 0.444963
Target:  5'- aGCCCCaCCAGCcugGCCCGCUgCaaGAUa -3'
miRNA:   3'- aUGGGG-GGUCGa--UGGGUGGgGgaCUA- -5'
9435 5' -63.1 NC_002531.1 + 78468 0.67 0.444963
Target:  5'- cACCCCcacgCCAGCUAaacucuCCaCACCCCCagGAUu -3'
miRNA:   3'- aUGGGG----GGUCGAU------GG-GUGGGGGa-CUA- -5'
9435 5' -63.1 NC_002531.1 + 33568 0.67 0.42728
Target:  5'- -uUCCCCCA---ACCCACCCCUUGc- -3'
miRNA:   3'- auGGGGGGUcgaUGGGUGGGGGACua -5'
9435 5' -63.1 NC_002531.1 + 89321 0.67 0.424663
Target:  5'- -cUCCCCCGGCagcaguacauuuUAuauagcucucaggcUCCACCCCCUGGUc -3'
miRNA:   3'- auGGGGGGUCG------------AU--------------GGGUGGGGGACUA- -5'
9435 5' -63.1 NC_002531.1 + 15333 0.68 0.400714
Target:  5'- aUACCUCUCAGCUGCCCcaagaaugucaauGCCuCUUUGAg -3'
miRNA:   3'- -AUGGGGGGUCGAUGGG-------------UGG-GGGACUa -5'
9435 5' -63.1 NC_002531.1 + 112553 0.68 0.383327
Target:  5'- aACCCCCCuuuuucacaauugggGGCUGCCCAgcugcacacauucauCCCCCcuaGAg -3'
miRNA:   3'- aUGGGGGG---------------UCGAUGGGU---------------GGGGGa--CUa -5'
9435 5' -63.1 NC_002531.1 + 130213 0.68 0.368827
Target:  5'- gACCCCCagaCAGggACCCccccaacCCCCCUGAc -3'
miRNA:   3'- aUGGGGG---GUCgaUGGGu------GGGGGACUa -5'
9435 5' -63.1 NC_002531.1 + 102608 0.71 0.256942
Target:  5'- gACCgCCCAGagagGCCUaaagauggGCCCCCUGAUa -3'
miRNA:   3'- aUGGgGGGUCga--UGGG--------UGGGGGACUA- -5'
9435 5' -63.1 NC_002531.1 + 54893 1.03 0.001146
Target:  5'- uUACCCCCCAGCUACCCACCCCCUGAUc -3'
miRNA:   3'- -AUGGGGGGUCGAUGGGUGGGGGACUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.