miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9436 3' -61.4 NC_002531.1 + 114894 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 114952 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115010 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115068 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115126 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115184 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115242 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115300 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115358 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115416 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115474 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115532 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115590 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115647 0.77 0.135999
Target:  5'- aGGUGGCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACCGGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115705 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115763 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115821 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 118222 0.68 0.476777
Target:  5'- -cUGGCCCcuuugGUCCCUcgGGGACCucuugagCCCCUGg -3'
miRNA:   3'- uuACCGGG-----CAGGGG--CUUUGG-------GGGGAC- -5'
9436 3' -61.4 NC_002531.1 + 118412 0.68 0.468482
Target:  5'- --aGGCCCcucugGUCCCUcGGGCCCCUCUu -3'
miRNA:   3'- uuaCCGGG-----CAGGGGcUUUGGGGGGAc -5'
9436 3' -61.4 NC_002531.1 + 119072 0.7 0.381806
Target:  5'- --gGGCCCucGUCUUCaucuGGCCCCCCUGg -3'
miRNA:   3'- uuaCCGGG--CAGGGGcu--UUGGGGGGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.