miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9436 3' -61.4 NC_002531.1 + 56965 1.06 0.001149
Target:  5'- aAAUGGCCCGUCCCCGAAACCCCCCUGg -3'
miRNA:   3'- -UUACCGGGCAGGGGCUUUGGGGGGAC- -5'
9436 3' -61.4 NC_002531.1 + 115647 0.77 0.135999
Target:  5'- aGGUGGCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACCGGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 114662 0.71 0.332969
Target:  5'- aGGUGGcCCCGUCCCCGGgcugcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU--------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 114489 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 114431 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 114547 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 114315 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 114257 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 114199 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 114605 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115300 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115242 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115358 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115126 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115184 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115068 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 115010 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 114952 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 114836 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5'
9436 3' -61.4 NC_002531.1 + 114778 0.71 0.338163
Target:  5'- aGGUGGcCCCGUCCCCGGgcuggcuggcuagguGGCCCCg--- -3'
miRNA:   3'- -UUACC-GGGCAGGGGCU---------------UUGGGGggac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.