miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9441 3' -54.4 NC_002531.1 + 43686 0.66 0.912569
Target:  5'- uGGGCGaaauGCCAAuuuuuUAUCUUacuuacauagggGUGCGCCUCa -3'
miRNA:   3'- -UCCGU----CGGUUu----AUGGGA------------CAUGCGGAG- -5'
9441 3' -54.4 NC_002531.1 + 102791 0.67 0.885976
Target:  5'- uGGGCAGCCGGcaACUUc---CGCCUCa -3'
miRNA:   3'- -UCCGUCGGUUuaUGGGacauGCGGAG- -5'
9441 3' -54.4 NC_002531.1 + 96241 0.67 0.878715
Target:  5'- uGGCAcGCCGuGUAcuCCCUacuCGCCUCa -3'
miRNA:   3'- uCCGU-CGGUuUAU--GGGAcauGCGGAG- -5'
9441 3' -54.4 NC_002531.1 + 9730 0.68 0.847366
Target:  5'- uAGGCgAGCCAGGUGCagcauCUucGCGCCUg -3'
miRNA:   3'- -UCCG-UCGGUUUAUGg----GAcaUGCGGAg -5'
9441 3' -54.4 NC_002531.1 + 12728 0.68 0.838987
Target:  5'- uGGCAGCCGAgcccacGUACUCUGUGauguuguagGCCg- -3'
miRNA:   3'- uCCGUCGGUU------UAUGGGACAUg--------CGGag -5'
9441 3' -54.4 NC_002531.1 + 48391 0.68 0.830405
Target:  5'- cAGGUGGCCAAGaacauguuuUACCCaGUGC-CCUUu -3'
miRNA:   3'- -UCCGUCGGUUU---------AUGGGaCAUGcGGAG- -5'
9441 3' -54.4 NC_002531.1 + 24115 0.69 0.794227
Target:  5'- uGGCAGCgAGAUGgCCUGggACGUC-Cg -3'
miRNA:   3'- uCCGUCGgUUUAUgGGACa-UGCGGaG- -5'
9441 3' -54.4 NC_002531.1 + 35099 0.69 0.778055
Target:  5'- uAGGCacaaaagaugaacccGGCCAGGUGuuucaccacauauCCCUGUGUGCCUUg -3'
miRNA:   3'- -UCCG---------------UCGGUUUAU-------------GGGACAUGCGGAG- -5'
9441 3' -54.4 NC_002531.1 + 121956 0.69 0.755538
Target:  5'- uGGCGGCUGuugggGCCCUG-ACGgCUCu -3'
miRNA:   3'- uCCGUCGGUuua--UGGGACaUGCgGAG- -5'
9441 3' -54.4 NC_002531.1 + 29653 0.7 0.73545
Target:  5'- -cGC-GCaugagcAUGCCCUGUAUGCCUCa -3'
miRNA:   3'- ucCGuCGguu---UAUGGGACAUGCGGAG- -5'
9441 3' -54.4 NC_002531.1 + 15186 0.71 0.652053
Target:  5'- gGGGCAGCUgagAGGUAuaucCCCUGU--GCCUCg -3'
miRNA:   3'- -UCCGUCGG---UUUAU----GGGACAugCGGAG- -5'
9441 3' -54.4 NC_002531.1 + 67542 1.09 0.003019
Target:  5'- uAGGCAGCCAAAUACCCUGUACGCCUCc -3'
miRNA:   3'- -UCCGUCGGUUUAUGGGACAUGCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.