miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9441 5' -45.1 NC_002531.1 + 41209 0.66 0.999933
Target:  5'- gUGGAccaugucaaAGCAUACAuuGGCCucguaGAGCUUUg-- -3'
miRNA:   3'- -ACCU---------UCGUAUGU--CCGG-----UUUGAAAaaa -5'
9441 5' -45.1 NC_002531.1 + 92131 0.67 0.999843
Target:  5'- -aGAAGCAUACGGagcgcaGCCAAGCg----- -3'
miRNA:   3'- acCUUCGUAUGUC------CGGUUUGaaaaaa -5'
9441 5' -45.1 NC_002531.1 + 29810 0.67 0.999656
Target:  5'- -uGAGGCAUACAGGgCAuGCUc---- -3'
miRNA:   3'- acCUUCGUAUGUCCgGUuUGAaaaaa -5'
9441 5' -45.1 NC_002531.1 + 11957 0.67 0.999639
Target:  5'- gUGGAAGCAauccaggagcauuugUGCAcgacaaguacaagauGGCCAAGCUg---- -3'
miRNA:   3'- -ACCUUCGU---------------AUGU---------------CCGGUUUGAaaaaa -5'
9441 5' -45.1 NC_002531.1 + 65582 0.68 0.999561
Target:  5'- uUGGugaccuGGUuugacgucagGUGCAGGCCAGACUg---- -3'
miRNA:   3'- -ACCu-----UCG----------UAUGUCCGGUUUGAaaaaa -5'
9441 5' -45.1 NC_002531.1 + 30855 0.68 0.999443
Target:  5'- gUGGggGCAggggGCAGGa-AAACUUUc-- -3'
miRNA:   3'- -ACCuuCGUa---UGUCCggUUUGAAAaaa -5'
9441 5' -45.1 NC_002531.1 + 15616 0.68 0.99936
Target:  5'- cGGGAGaaugaacuacaaaaAUACAGGCCuAAACUUa--- -3'
miRNA:   3'- aCCUUCg-------------UAUGUCCGG-UUUGAAaaaa -5'
9441 5' -45.1 NC_002531.1 + 10234 0.68 0.999299
Target:  5'- cUGGAAGCuuauguuuUACAGGCUAuACa----- -3'
miRNA:   3'- -ACCUUCGu-------AUGUCCGGUuUGaaaaaa -5'
9441 5' -45.1 NC_002531.1 + 95084 0.68 0.999299
Target:  5'- gGGAGGCAU---GGUCAAACUUa--- -3'
miRNA:   3'- aCCUUCGUAuguCCGGUUUGAAaaaa -5'
9441 5' -45.1 NC_002531.1 + 21684 0.7 0.996511
Target:  5'- gGGGAGCAUGCcagAGGCCAc-------- -3'
miRNA:   3'- aCCUUCGUAUG---UCCGGUuugaaaaaa -5'
9441 5' -45.1 NC_002531.1 + 65116 0.7 0.996511
Target:  5'- gGGGAGU-UGCAGGCCAcGCa----- -3'
miRNA:   3'- aCCUUCGuAUGUCCGGUuUGaaaaaa -5'
9441 5' -45.1 NC_002531.1 + 37273 0.71 0.992099
Target:  5'- aGGuGGCAUAgAGGCCGGAUa----- -3'
miRNA:   3'- aCCuUCGUAUgUCCGGUUUGaaaaaa -5'
9441 5' -45.1 NC_002531.1 + 67384 0.71 0.98941
Target:  5'- aGGAGGCGUACAGGgUAuuuGGCUg---- -3'
miRNA:   3'- aCCUUCGUAUGUCCgGU---UUGAaaaaa -5'
9441 5' -45.1 NC_002531.1 + 76667 0.72 0.979571
Target:  5'- gGGAAGCAgcauguucacUGCAGGCCAcAACa----- -3'
miRNA:   3'- aCCUUCGU----------AUGUCCGGU-UUGaaaaaa -5'
9441 5' -45.1 NC_002531.1 + 107063 0.72 0.979571
Target:  5'- uUGGggGCAUGCAGGgCAuaauAGCa----- -3'
miRNA:   3'- -ACCuuCGUAUGUCCgGU----UUGaaaaaa -5'
9441 5' -45.1 NC_002531.1 + 67508 1.06 0.032304
Target:  5'- aUGGAAGCAUACAGGCCAAACUUUUUUu -3'
miRNA:   3'- -ACCUUCGUAUGUCCGGUUUGAAAAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.