miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9442 3' -56.3 NC_002531.1 + 8831 0.66 0.840217
Target:  5'- aACCugGCUcgGCCAuACUucgugucaACCUCCa -3'
miRNA:   3'- cUGGugCGGuaCGGU-UGAug------UGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 9039 0.7 0.66903
Target:  5'- -uCCACuaGCCAUG-CAGCaUAUGCCCCCc -3'
miRNA:   3'- cuGGUG--CGGUACgGUUG-AUGUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 10136 0.67 0.831885
Target:  5'- cACCugGCCuUGCUc-UUugACCCCUg -3'
miRNA:   3'- cUGGugCGGuACGGuuGAugUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 13054 0.66 0.859414
Target:  5'- -cCCACGUCAU-CCAguacaACUGCaacacuuacuggcaaGCCCCCu -3'
miRNA:   3'- cuGGUGCGGUAcGGU-----UGAUG---------------UGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 17756 0.66 0.848357
Target:  5'- cAUCACaGCCu--CCuuUUACACCCCCa -3'
miRNA:   3'- cUGGUG-CGGuacGGuuGAUGUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 18570 0.7 0.627731
Target:  5'- aGACCAUGCCAgugggugacguUGCCAcCcuggACACCUUCa -3'
miRNA:   3'- -CUGGUGCGGU-----------ACGGUuGa---UGUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 20377 0.67 0.814673
Target:  5'- aGGCCugGCCA-GUgGACUGguacaggugUACCaCCCa -3'
miRNA:   3'- -CUGGugCGGUaCGgUUGAU---------GUGG-GGG- -5'
9442 3' -56.3 NC_002531.1 + 27062 0.68 0.739766
Target:  5'- uGACCAUGCUA-GCCAGCaagAgACCUCa -3'
miRNA:   3'- -CUGGUGCGGUaCGGUUGa--UgUGGGGg -5'
9442 3' -56.3 NC_002531.1 + 34429 0.66 0.840217
Target:  5'- aGACa--GCUGUGCCGcaACUguuGCACCuCCCg -3'
miRNA:   3'- -CUGgugCGGUACGGU--UGA---UGUGG-GGG- -5'
9442 3' -56.3 NC_002531.1 + 35722 0.79 0.231773
Target:  5'- aGGCUggGCCuGUGCCAACaugugaaggUGCACCCCCa -3'
miRNA:   3'- -CUGGugCGG-UACGGUUG---------AUGUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 36197 0.71 0.600882
Target:  5'- aACCACG-CGUGCCAuugccucucucgcgaACccuCGCCCCCg -3'
miRNA:   3'- cUGGUGCgGUACGGU---------------UGau-GUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 37534 0.66 0.871546
Target:  5'- aACC-UGCCccaGCCAucccCUcaGCACCCCCa -3'
miRNA:   3'- cUGGuGCGGua-CGGUu---GA--UGUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 38949 0.74 0.42166
Target:  5'- aGACCcCuaCGUGCCAACcagguuuCACCCCCa -3'
miRNA:   3'- -CUGGuGcgGUACGGUUGau-----GUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 40727 0.74 0.42166
Target:  5'- aGCCAUGCCA-GCUAACUGguaaGCCCCg -3'
miRNA:   3'- cUGGUGCGGUaCGGUUGAUg---UGGGGg -5'
9442 3' -56.3 NC_002531.1 + 46156 0.66 0.843497
Target:  5'- aGCUGCGCCAcGCCccuccucuguuuauACUACAgUCCCu -3'
miRNA:   3'- cUGGUGCGGUaCGGu-------------UGAUGUgGGGG- -5'
9442 3' -56.3 NC_002531.1 + 47894 0.68 0.759256
Target:  5'- aACCAgguaGCCcgGCCAugUaccACACCCgCa -3'
miRNA:   3'- cUGGUg---CGGuaCGGUugA---UGUGGGgG- -5'
9442 3' -56.3 NC_002531.1 + 52168 0.67 0.805808
Target:  5'- aGACUcCGCaguggcaauUGCCAACUuuauugacgaguGCGCCCCUa -3'
miRNA:   3'- -CUGGuGCGgu-------ACGGUUGA------------UGUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 55136 0.71 0.586482
Target:  5'- cGCCAUgcuGCCAUGCCGGgUAUagaggGCCCCa -3'
miRNA:   3'- cUGGUG---CGGUACGGUUgAUG-----UGGGGg -5'
9442 3' -56.3 NC_002531.1 + 57131 0.69 0.6793
Target:  5'- aGCCAaGCUgauaGCCAACUucACGCCCCUg -3'
miRNA:   3'- cUGGUgCGGua--CGGUUGA--UGUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 60849 0.68 0.768834
Target:  5'- uACC-CGUguUGCUAAUcauCACCCCCg -3'
miRNA:   3'- cUGGuGCGguACGGUUGau-GUGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.