Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9442 | 3' | -56.3 | NC_002531.1 | + | 60849 | 0.68 | 0.768834 |
Target: 5'- uACC-CGUguUGCUAAUcauCACCCCCg -3' miRNA: 3'- cUGGuGCGguACGGUUGau-GUGGGGG- -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 47894 | 0.68 | 0.759256 |
Target: 5'- aACCAgguaGCCcgGCCAugUaccACACCCgCa -3' miRNA: 3'- cUGGUg---CGGuaCGGUugA---UGUGGGgG- -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 96721 | 0.68 | 0.75636 |
Target: 5'- aGCCACGCCuucccuaaagucuggGCagguaAACUACACCUCa -3' miRNA: 3'- cUGGUGCGGua-------------CGg----UUGAUGUGGGGg -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 27062 | 0.68 | 0.739766 |
Target: 5'- uGACCAUGCUA-GCCAGCaagAgACCUCa -3' miRNA: 3'- -CUGGUGCGGUaCGGUUGa--UgUGGGGg -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 115684 | 0.69 | 0.699713 |
Target: 5'- gGGCCACcuaGCCA-GCCAGCccggggacgggGCcaGCCCCCa -3' miRNA: 3'- -CUGGUG---CGGUaCGGUUGa----------UG--UGGGGG- -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 57131 | 0.69 | 0.6793 |
Target: 5'- aGCCAaGCUgauaGCCAACUucACGCCCCUg -3' miRNA: 3'- cUGGUgCGGua--CGGUUGA--UGUGGGGG- -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 123210 | 0.7 | 0.672115 |
Target: 5'- cACCAgGCCAuUGCCAcaucugucuauguGCUGCACCacaaaggccuuugagCCCa -3' miRNA: 3'- cUGGUgCGGU-ACGGU-------------UGAUGUGG---------------GGG- -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 9039 | 0.7 | 0.66903 |
Target: 5'- -uCCACuaGCCAUG-CAGCaUAUGCCCCCc -3' miRNA: 3'- cuGGUG--CGGUACgGUUG-AUGUGGGGG- -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 18570 | 0.7 | 0.627731 |
Target: 5'- aGACCAUGCCAgugggugacguUGCCAcCcuggACACCUUCa -3' miRNA: 3'- -CUGGUGCGGU-----------ACGGUuGa---UGUGGGGG- -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 36197 | 0.71 | 0.600882 |
Target: 5'- aACCACG-CGUGCCAuugccucucucgcgaACccuCGCCCCCg -3' miRNA: 3'- cUGGUGCgGUACGGU---------------UGau-GUGGGGG- -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 82080 | 0.71 | 0.596762 |
Target: 5'- cACCucaGCGCagcGCCccuCUGCACCCCCg -3' miRNA: 3'- cUGG---UGCGguaCGGuu-GAUGUGGGGG- -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 55136 | 0.71 | 0.586482 |
Target: 5'- cGCCAUgcuGCCAUGCCGGgUAUagaggGCCCCa -3' miRNA: 3'- cUGGUG---CGGUACGGUUgAUG-----UGGGGg -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 122529 | 0.71 | 0.576236 |
Target: 5'- uGACCGUGCCAgaggGCCuuC-ACGCCCUCg -3' miRNA: 3'- -CUGGUGCGGUa---CGGuuGaUGUGGGGG- -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 121844 | 0.73 | 0.458145 |
Target: 5'- -cCCACGCCAuUGCCuauGGCUAgGCCUCUg -3' miRNA: 3'- cuGGUGCGGU-ACGG---UUGAUgUGGGGG- -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 87238 | 0.74 | 0.439687 |
Target: 5'- cACC-C-CCAaGCCGACUGCACCaCCCa -3' miRNA: 3'- cUGGuGcGGUaCGGUUGAUGUGG-GGG- -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 38949 | 0.74 | 0.42166 |
Target: 5'- aGACCcCuaCGUGCCAACcagguuuCACCCCCa -3' miRNA: 3'- -CUGGuGcgGUACGGUUGau-----GUGGGGG- -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 40727 | 0.74 | 0.42166 |
Target: 5'- aGCCAUGCCA-GCUAACUGguaaGCCCCg -3' miRNA: 3'- cUGGUGCGGUaCGGUUGAUg---UGGGGg -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 87518 | 0.74 | 0.404085 |
Target: 5'- uGACCACaGCCGUGCaguccACUaauACugCCCCa -3' miRNA: 3'- -CUGGUG-CGGUACGgu---UGA---UGugGGGG- -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 78472 | 0.77 | 0.287923 |
Target: 5'- -cCCACGCCA-GCUaAACUcuccACACCCCCa -3' miRNA: 3'- cuGGUGCGGUaCGG-UUGA----UGUGGGGG- -5' |
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9442 | 3' | -56.3 | NC_002531.1 | + | 35722 | 0.79 | 0.231773 |
Target: 5'- aGGCUggGCCuGUGCCAACaugugaaggUGCACCCCCa -3' miRNA: 3'- -CUGGugCGG-UACGGUUG---------AUGUGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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