miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9443 5' -55.4 NC_002531.1 + 124487 0.66 0.89517
Target:  5'- gAGAUGAGCUCCUuccacuAUGCcauccuacaguGCCAaGGCAa -3'
miRNA:   3'- -UCUACUCGAGGA------UGUG-----------UGGUcCCGUc -5'
9443 5' -55.4 NC_002531.1 + 57393 0.66 0.893814
Target:  5'- uGGUGAGUUUCgucaaggaccuCACGCCGGcaGGCGGg -3'
miRNA:   3'- uCUACUCGAGGau---------GUGUGGUC--CCGUC- -5'
9443 5' -55.4 NC_002531.1 + 18243 0.66 0.873845
Target:  5'- uGAUGAGCU-CUAUAUAC--GGGCGGc -3'
miRNA:   3'- uCUACUCGAgGAUGUGUGguCCCGUC- -5'
9443 5' -55.4 NC_002531.1 + 80680 0.67 0.842257
Target:  5'- gAGggGGGCUCag-UACGCUAGGGCc- -3'
miRNA:   3'- -UCuaCUCGAGgauGUGUGGUCCCGuc -5'
9443 5' -55.4 NC_002531.1 + 69364 0.67 0.842257
Target:  5'- uGAaGAGCUCCgagacuaucagACGCGCUGGGGUu- -3'
miRNA:   3'- uCUaCUCGAGGa----------UGUGUGGUCCCGuc -5'
9443 5' -55.4 NC_002531.1 + 14442 0.68 0.80746
Target:  5'- uGGUGGGC-CCguggACACAUgAguGGGCAGa -3'
miRNA:   3'- uCUACUCGaGGa---UGUGUGgU--CCCGUC- -5'
9443 5' -55.4 NC_002531.1 + 49062 0.68 0.80746
Target:  5'- gGGGUGGGCcagauaUCUcACcCGCCAGGGCuGg -3'
miRNA:   3'- -UCUACUCG------AGGaUGuGUGGUCCCGuC- -5'
9443 5' -55.4 NC_002531.1 + 10095 0.68 0.76999
Target:  5'- -aAUGAGUUCCuUGCAC-CCAGcaaGGCAGc -3'
miRNA:   3'- ucUACUCGAGG-AUGUGuGGUC---CCGUC- -5'
9443 5' -55.4 NC_002531.1 + 37903 0.69 0.710104
Target:  5'- aAGAUGuggccuguaggcAGCUCCUAU--ACCAGGGCc- -3'
miRNA:   3'- -UCUAC------------UCGAGGAUGugUGGUCCCGuc -5'
9443 5' -55.4 NC_002531.1 + 47142 0.72 0.564041
Target:  5'- ---gGAGCUCCUGCaggcagGCGCUGGGGCu- -3'
miRNA:   3'- ucuaCUCGAGGAUG------UGUGGUCCCGuc -5'
9443 5' -55.4 NC_002531.1 + 88823 1.08 0.002744
Target:  5'- gAGAUGAGCUCCUACACACCAGGGCAGc -3'
miRNA:   3'- -UCUACUCGAGGAUGUGUGGUCCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.