miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9444 3' -53.4 NC_002531.1 + 15693 0.66 0.959693
Target:  5'- uCCACAGGGuacAGAGUugCuuuuCUGCgGUg -3'
miRNA:   3'- -GGUGUCUCu--UCUCGugGu---GAUGgCGa -5'
9444 3' -53.4 NC_002531.1 + 8158 0.66 0.955869
Target:  5'- cCCACAGuGggGuGCAaagcCCACaUugUGCa -3'
miRNA:   3'- -GGUGUCuCuuCuCGU----GGUG-AugGCGa -5'
9444 3' -53.4 NC_002531.1 + 87263 0.67 0.938138
Target:  5'- gCUACAGAGAGGAGCcuaaaaaguucACCcccaaGCcgACUGCa -3'
miRNA:   3'- -GGUGUCUCUUCUCG-----------UGG-----UGa-UGGCGa -5'
9444 3' -53.4 NC_002531.1 + 46293 0.67 0.92221
Target:  5'- gCGCAGcuugacGGAGAGCACCGuguCUaucagGCCGCg -3'
miRNA:   3'- gGUGUCu-----CUUCUCGUGGU---GA-----UGGCGa -5'
9444 3' -53.4 NC_002531.1 + 19026 0.67 0.916395
Target:  5'- aCUAUAGAgcuGAAGAGUgugGCCAC-ACUGCUc -3'
miRNA:   3'- -GGUGUCU---CUUCUCG---UGGUGaUGGCGA- -5'
9444 3' -53.4 NC_002531.1 + 62992 0.67 0.916395
Target:  5'- gCCGCAGuGggGGGCguGCCACaguUUGCa -3'
miRNA:   3'- -GGUGUCuCuuCUCG--UGGUGau-GGCGa -5'
9444 3' -53.4 NC_002531.1 + 103801 0.67 0.909084
Target:  5'- uCCAgGGGGcccacuucCACCGCUGCCGCUu -3'
miRNA:   3'- -GGUgUCUCuucuc---GUGGUGAUGGCGA- -5'
9444 3' -53.4 NC_002531.1 + 34247 0.68 0.890634
Target:  5'- uCCACGGccauacccccGGccAGAGCACCACUAuCCaGCUu -3'
miRNA:   3'- -GGUGUC----------UCu-UCUCGUGGUGAU-GG-CGA- -5'
9444 3' -53.4 NC_002531.1 + 288 0.68 0.883583
Target:  5'- gCugGGAGAGGGGCuauCUGCUGCgcggCGCUu -3'
miRNA:   3'- gGugUCUCUUCUCGu--GGUGAUG----GCGA- -5'
9444 3' -53.4 NC_002531.1 + 90970 0.7 0.810235
Target:  5'- -gGCAGAGAGGAGCAUggucaGCUcCUGCa -3'
miRNA:   3'- ggUGUCUCUUCUCGUGg----UGAuGGCGa -5'
9444 3' -53.4 NC_002531.1 + 45979 0.7 0.810235
Target:  5'- aCCACAucagugcuGAGAuAGAGCuaGCCAUUGCCGaCUu -3'
miRNA:   3'- -GGUGU--------CUCU-UCUCG--UGGUGAUGGC-GA- -5'
9444 3' -53.4 NC_002531.1 + 81293 0.72 0.692302
Target:  5'- aCC-CAGAGGaacuagAGAGUACCauGCUGCUGCa -3'
miRNA:   3'- -GGuGUCUCU------UCUCGUGG--UGAUGGCGa -5'
9444 3' -53.4 NC_002531.1 + 99617 0.73 0.660949
Target:  5'- aCCAgCAGuucccuuuAGAAGAGCGUCGCUGCUGCg -3'
miRNA:   3'- -GGU-GUC--------UCUUCUCGUGGUGAUGGCGa -5'
9444 3' -53.4 NC_002531.1 + 91159 1.09 0.004172
Target:  5'- uCCACAGAGAAGAGCACCACUACCGCUc -3'
miRNA:   3'- -GGUGUCUCUUCUCGUGGUGAUGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.