Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9444 | 5' | -56.4 | NC_002531.1 | + | 37528 | 0.66 | 0.852138 |
Target: 5'- gGGAGUUGGCUAgguuagucUGCacuacguuaUCCagCUCUGCCu -3' miRNA: 3'- -CCUCGACUGGU--------ACG---------AGGa-GAGACGGu -5' |
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9444 | 5' | -56.4 | NC_002531.1 | + | 87383 | 0.66 | 0.835743 |
Target: 5'- -uGGCUGACgG-GCUCUUgCUCUGCUu -3' miRNA: 3'- ccUCGACUGgUaCGAGGA-GAGACGGu -5' |
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9444 | 5' | -56.4 | NC_002531.1 | + | 87101 | 0.68 | 0.753477 |
Target: 5'- uGGGGgUGaACUuuuuagGCUCCUCUCUGUa- -3' miRNA: 3'- -CCUCgAC-UGGua----CGAGGAGAGACGgu -5' |
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9444 | 5' | -56.4 | NC_002531.1 | + | 122839 | 0.7 | 0.631095 |
Target: 5'- cGGAGCaUGGCCuugaGCUCCUCgcagcUCUGaCCu -3' miRNA: 3'- -CCUCG-ACUGGua--CGAGGAG-----AGAC-GGu -5' |
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9444 | 5' | -56.4 | NC_002531.1 | + | 35613 | 0.73 | 0.46963 |
Target: 5'- gGGAGUgaaagagGA-CAUGCUCCUCUCagagGCCGg -3' miRNA: 3'- -CCUCGa------CUgGUACGAGGAGAGa---CGGU- -5' |
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9444 | 5' | -56.4 | NC_002531.1 | + | 122990 | 0.82 | 0.132028 |
Target: 5'- aGGAGCUcaaGGCCAUGCUCCgcgC-CUGCCGg -3' miRNA: 3'- -CCUCGA---CUGGUACGAGGa--GaGACGGU- -5' |
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9444 | 5' | -56.4 | NC_002531.1 | + | 91125 | 1.11 | 0.001447 |
Target: 5'- aGGAGCUGACCAUGCUCCUCUCUGCCAa -3' miRNA: 3'- -CCUCGACUGGUACGAGGAGAGACGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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