Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 9445 | 5' | -56.8 | NC_002531.1 | + | 104927 | 0.66 | 0.810895 |
|
Target: 5'- uGAAGAacuuGGCCcugagguGCGCUCUCaGCCACc-- -3' miRNA: 3'- -UUUCU----CCGG-------UGCGAGAGaCGGUGaca -5' |
|||||||
| 9445 | 5' | -56.8 | NC_002531.1 | + | 105403 | 0.66 | 0.802716 |
|
Target: 5'- -cAGAGGUCGCcUUCUaugGCCACUGc -3' miRNA: 3'- uuUCUCCGGUGcGAGAga-CGGUGACa -5' |
|||||||
| 9445 | 5' | -56.8 | NC_002531.1 | + | 81460 | 0.67 | 0.764856 |
|
Target: 5'- cAAGAGG-CugGUaUCUCUGCCGCa-- -3' miRNA: 3'- uUUCUCCgGugCG-AGAGACGGUGaca -5' |
|||||||
| 9445 | 5' | -56.8 | NC_002531.1 | + | 104998 | 0.67 | 0.735118 |
|
Target: 5'- --cGAGGcCCugGC-CUCUGCUcucaagucuuGCUGUg -3' miRNA: 3'- uuuCUCC-GGugCGaGAGACGG----------UGACA- -5' |
|||||||
| 9445 | 5' | -56.8 | NC_002531.1 | + | 35639 | 0.72 | 0.449081 |
|
Target: 5'- -cAGAGGCCggGCGCUCgcagCUGUgGCUGc -3' miRNA: 3'- uuUCUCCGG--UGCGAGa---GACGgUGACa -5' |
|||||||
| 9445 | 5' | -56.8 | NC_002531.1 | + | 94801 | 1.05 | 0.002666 |
|
Target: 5'- cAAAGAGGCCACGCUCUCUGCCACUGUa -3' miRNA: 3'- -UUUCUCCGGUGCGAGAGACGGUGACA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home