Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9446 | 3' | -55.2 | NC_002531.1 | + | 3981 | 0.66 | 0.89517 |
Target: 5'- uGUGGuacuaaCCACaGAaacccaGCUGCUGGCUGAUa -3' miRNA: 3'- -CAUCc-----GGUG-CUg-----CGAUGACCGACUAc -5' |
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9446 | 3' | -55.2 | NC_002531.1 | + | 114659 | 0.66 | 0.881188 |
Target: 5'- --uGGCCcCGuccccGgGCUGCUGGCUaGGUGg -3' miRNA: 3'- cauCCGGuGC-----UgCGAUGACCGA-CUAC- -5' |
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9446 | 3' | -55.2 | NC_002531.1 | + | 68700 | 0.67 | 0.866275 |
Target: 5'- --uGGCUAUGAUGUUaGCUaGGCUGGUa -3' miRNA: 3'- cauCCGGUGCUGCGA-UGA-CCGACUAc -5' |
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9446 | 3' | -55.2 | NC_002531.1 | + | 74393 | 0.68 | 0.779576 |
Target: 5'- cUGGGCCugGAUaCccauaACUGGUUGAUGu -3' miRNA: 3'- cAUCCGGugCUGcGa----UGACCGACUAC- -5' |
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9446 | 3' | -55.2 | NC_002531.1 | + | 66142 | 0.69 | 0.767089 |
Target: 5'- -cAGGCCAUgacauuuucagcaaGGCGCUGCacggGGCUGuUGa -3' miRNA: 3'- caUCCGGUG--------------CUGCGAUGa---CCGACuAC- -5' |
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9446 | 3' | -55.2 | NC_002531.1 | + | 90835 | 0.73 | 0.513125 |
Target: 5'- aUAGGCCGCcACGCUcACUGGCcGggGg -3' miRNA: 3'- cAUCCGGUGcUGCGA-UGACCGaCuaC- -5' |
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9446 | 3' | -55.2 | NC_002531.1 | + | 96207 | 1.08 | 0.003075 |
Target: 5'- cGUAGGCCACGACGCUACUGGCUGAUGc -3' miRNA: 3'- -CAUCCGGUGCUGCGAUGACCGACUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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