Results 61 - 80 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 47403 | 0.69 | 0.988207 |
Target: 5'- aGGccGCCucuucggcagCCACCCGCUcuACCa -3' miRNA: 3'- -CCuuCGGuuuua-----GGUGGGUGGuuUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 17334 | 0.7 | 0.979749 |
Target: 5'- --cAGCCuGAAAUCCAU--GCCGAGCCg -3' miRNA: 3'- ccuUCGG-UUUUAGGUGggUGGUUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 101761 | 0.7 | 0.980665 |
Target: 5'- gGGAAGCCAuauGAguaaggggggguuucAUCCACCCuaGCUuuACUg -3' miRNA: 3'- -CCUUCGGU---UU---------------UAGGUGGG--UGGuuUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 82285 | 0.7 | 0.977317 |
Target: 5'- aGGAAGCCAcaAAuuuUCCucugcCCCACguAACUg -3' miRNA: 3'- -CCUUCGGU--UUu--AGGu----GGGUGguUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 98291 | 0.7 | 0.977317 |
Target: 5'- -uAGGCCAGcAUCaCAUCCACaGAACCu -3' miRNA: 3'- ccUUCGGUUuUAG-GUGGGUGgUUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 10597 | 0.7 | 0.977317 |
Target: 5'- -cGGGCCGAGGcCCauGCCCACCAuagaacaagucaGGCCu -3' miRNA: 3'- ccUUCGGUUUUaGG--UGGGUGGU------------UUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 54232 | 0.7 | 0.981981 |
Target: 5'- aGGAAGUguA---CCACCCGCUAA-CCg -3' miRNA: 3'- -CCUUCGguUuuaGGUGGGUGGUUuGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 21927 | 0.7 | 0.981981 |
Target: 5'- gGGAGGCUA--GUgCAUCC-CCAAACUu -3' miRNA: 3'- -CCUUCGGUuuUAgGUGGGuGGUUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 129556 | 0.71 | 0.965424 |
Target: 5'- cGGGccugcAGCCAAGA---ACCCACCAaaaGACCc -3' miRNA: 3'- -CCU-----UCGGUUUUaggUGGGUGGU---UUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 130002 | 0.71 | 0.971222 |
Target: 5'- aGGAGGCCuAGGUCCuuacgugcuaccUCCACCuuuACCu -3' miRNA: 3'- -CCUUCGGuUUUAGGu-----------GGGUGGuu-UGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 61767 | 0.71 | 0.965424 |
Target: 5'- cGGAGCU--GGUCCACUgGCUAGACa -3' miRNA: 3'- cCUUCGGuuUUAGGUGGgUGGUUUGg -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 129478 | 0.71 | 0.968738 |
Target: 5'- aGGuccuuGGgCGGGGUCUugCCugCAGGCCc -3' miRNA: 3'- -CCu----UCgGUUUUAGGugGGugGUUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 123174 | 0.72 | 0.938808 |
Target: 5'- uGGaAAGUCAAAGcgacCCACCCcgggcuguugcaccACCAGGCCa -3' miRNA: 3'- -CC-UUCGGUUUUa---GGUGGG--------------UGGUUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 55159 | 0.73 | 0.929844 |
Target: 5'- aGGAGCCAcc-UCCGCUCuCUAGACCc -3' miRNA: 3'- cCUUCGGUuuuAGGUGGGuGGUUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 118201 | 0.73 | 0.918304 |
Target: 5'- aGGGAGCagaGGGAUCUgaaggagaagGCCCAUgCAGACCa -3' miRNA: 3'- -CCUUCGg--UUUUAGG----------UGGGUG-GUUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 42541 | 0.73 | 0.914633 |
Target: 5'- -aAGGCCAugcaGAAauacuuucucauguuUCCACCCGCCGAcCCa -3' miRNA: 3'- ccUUCGGU----UUU---------------AGGUGGGUGGUUuGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 53567 | 0.73 | 0.905692 |
Target: 5'- --uAGCCAAGAg-CAUCCGCCAAGCa -3' miRNA: 3'- ccuUCGGUUUUagGUGGGUGGUUUGg -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 100655 | 0.73 | 0.918304 |
Target: 5'- uGGAAGCCAuguGUCaccucaacuaugCACCUACUcAACCa -3' miRNA: 3'- -CCUUCGGUuu-UAG------------GUGGGUGGuUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 56674 | 0.73 | 0.918304 |
Target: 5'- --cAGCCGuGAga-ACCCACCAGGCCu -3' miRNA: 3'- ccuUCGGUuUUaggUGGGUGGUUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 122990 | 0.73 | 0.924209 |
Target: 5'- aGGAgcucaaGGCCAugcUCCgcGCCUGCCGGGCCu -3' miRNA: 3'- -CCU------UCGGUuuuAGG--UGGGUGGUUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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