Results 81 - 86 of 86 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 24908 | 0.66 | 0.999121 |
Target: 5'- --uGGCCucAcgCCACCCagGCUAAAUCu -3' miRNA: 3'- ccuUCGGuuUuaGGUGGG--UGGUUUGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 84968 | 0.66 | 0.998921 |
Target: 5'- uGGAcAGCCu---UUCGCCCACUGGuugauGCCc -3' miRNA: 3'- -CCU-UCGGuuuuAGGUGGGUGGUU-----UGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 77406 | 0.66 | 0.998921 |
Target: 5'- --uAGCUAAug-CCACCCuCgGAGCCc -3' miRNA: 3'- ccuUCGGUUuuaGGUGGGuGgUUUGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 40107 | 0.66 | 0.998921 |
Target: 5'- gGGGAGUaac-AUCCGCCCcCCucaucguACCa -3' miRNA: 3'- -CCUUCGguuuUAGGUGGGuGGuu-----UGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 11439 | 0.66 | 0.998921 |
Target: 5'- aGGAAGCCu---UCgUACCCAacguaaAGGCCg -3' miRNA: 3'- -CCUUCGGuuuuAG-GUGGGUgg----UUUGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 35326 | 0.66 | 0.999288 |
Target: 5'- cGAAGCCcAGGUCgGCUggguCACUGGACUa -3' miRNA: 3'- cCUUCGGuUUUAGgUGG----GUGGUUUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home