Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 61767 | 0.71 | 0.965424 |
Target: 5'- cGGAGCU--GGUCCACUgGCUAGACa -3' miRNA: 3'- cCUUCGGuuUUAGGUGGgUGGUUUGg -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 61950 | 0.67 | 0.998039 |
Target: 5'- ---cGCCAuuAUCCACUgagauagCGCCAuaaGGCCa -3' miRNA: 3'- ccuuCGGUuuUAGGUGG-------GUGGU---UUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 69494 | 0.66 | 0.998684 |
Target: 5'- aGGcGGCCugcAUUCACCaagACCAcGCCa -3' miRNA: 3'- -CCuUCGGuuuUAGGUGGg--UGGUuUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 69736 | 0.66 | 0.998921 |
Target: 5'- gGGguGCUguAAUuacuaugcaCCGCCCGCCAagaAACCu -3' miRNA: 3'- -CCuuCGGuuUUA---------GGUGGGUGGU---UUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 77406 | 0.66 | 0.998921 |
Target: 5'- --uAGCUAAug-CCACCCuCgGAGCCc -3' miRNA: 3'- ccuUCGGUUuuaGGUGGGuGgUUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 79112 | 0.74 | 0.884069 |
Target: 5'- -uAAGCCAGAagaccAUCCACaCCACCcagaaggAGACCa -3' miRNA: 3'- ccUUCGGUUU-----UAGGUG-GGUGG-------UUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 81698 | 0.68 | 0.995461 |
Target: 5'- -aAAGCCAcagcccgcagcAGGUCCACuccauCCACCGgcuAGCCa -3' miRNA: 3'- ccUUCGGU-----------UUUAGGUG-----GGUGGU---UUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 82285 | 0.7 | 0.977317 |
Target: 5'- aGGAAGCCAcaAAuuuUCCucugcCCCACguAACUg -3' miRNA: 3'- -CCUUCGGU--UUu--AGGu----GGGUGguUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 82897 | 0.66 | 0.999084 |
Target: 5'- cGGAGGCauucuugCCcauaGCCCACC--ACCg -3' miRNA: 3'- -CCUUCGguuuua-GG----UGGGUGGuuUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 82969 | 0.67 | 0.997691 |
Target: 5'- uGGAGCUAuac-CCAUCUACCGGAgCg -3' miRNA: 3'- cCUUCGGUuuuaGGUGGGUGGUUUgG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 83778 | 0.68 | 0.995461 |
Target: 5'- -aGAGCCAAGAcCCcagagGCCCACUAAAa- -3' miRNA: 3'- ccUUCGGUUUUaGG-----UGGGUGGUUUgg -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 84805 | 0.69 | 0.98896 |
Target: 5'- aGGAgaccacAGCCuuAcUCUGCCCgaaggacagcgccGCCAAACCa -3' miRNA: 3'- -CCU------UCGGuuUuAGGUGGG-------------UGGUUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 84968 | 0.66 | 0.998921 |
Target: 5'- uGGAcAGCCu---UUCGCCCACUGGuugauGCCc -3' miRNA: 3'- -CCU-UCGGuuuuAGGUGGGUGGUU-----UGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 86360 | 0.66 | 0.998684 |
Target: 5'- -aGAGCCAc-AUCCAuaaUCUGCCAGGCUg -3' miRNA: 3'- ccUUCGGUuuUAGGU---GGGUGGUUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 86406 | 0.67 | 0.996138 |
Target: 5'- uGGggGUC----UCCACCUAUCuauACCu -3' miRNA: 3'- -CCuuCGGuuuuAGGUGGGUGGuu-UGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 87254 | 0.84 | 0.40796 |
Target: 5'- aGGAGCCuaaAAAGUUCACCC-CCAAGCCg -3' miRNA: 3'- cCUUCGG---UUUUAGGUGGGuGGUUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 87494 | 0.68 | 0.995461 |
Target: 5'- uGGAcGCCAgcGAGUCCcucaagcaGCCaGCCGAACa -3' miRNA: 3'- -CCUuCGGU--UUUAGG--------UGGgUGGUUUGg -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 89925 | 0.69 | 0.989106 |
Target: 5'- gGGAuGCuCAAAuucacAUCCuCCCACCcuuGCCa -3' miRNA: 3'- -CCUuCG-GUUU-----UAGGuGGGUGGuu-UGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 94844 | 0.66 | 0.999191 |
Target: 5'- uGAAGCUAAAgacacuguggcauauGguggCC-CCCACaCGAGCCa -3' miRNA: 3'- cCUUCGGUUU---------------Ua---GGuGGGUG-GUUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 96721 | 0.66 | 0.998684 |
Target: 5'- --cAGCCAAAAagucUCCACCUcucCCAcgucAGCCu -3' miRNA: 3'- ccuUCGGUUUU----AGGUGGGu--GGU----UUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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