miRNA display CGI


Results 61 - 80 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9447 5' -48.3 NC_002531.1 + 97526 0.68 0.99469
Target:  5'- -cGAGCgAu-AUCCAgCCACUAGACUa -3'
miRNA:   3'- ccUUCGgUuuUAGGUgGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 98291 0.7 0.977317
Target:  5'- -uAGGCCAGcAUCaCAUCCACaGAACCu -3'
miRNA:   3'- ccUUCGGUUuUAG-GUGGGUGgUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 100655 0.73 0.918304
Target:  5'- uGGAAGCCAuguGUCaccucaacuaugCACCUACUcAACCa -3'
miRNA:   3'- -CCUUCGGUuu-UAG------------GUGGGUGGuUUGG- -5'
9447 5' -48.3 NC_002531.1 + 100895 0.69 0.990486
Target:  5'- uGGAA-CCAucg-CCACCCACCucauAAACUc -3'
miRNA:   3'- -CCUUcGGUuuuaGGUGGGUGG----UUUGG- -5'
9447 5' -48.3 NC_002531.1 + 101761 0.7 0.980665
Target:  5'- gGGAAGCCAuauGAguaaggggggguuucAUCCACCCuaGCUuuACUg -3'
miRNA:   3'- -CCUUCGGU---UU---------------UAGGUGGG--UGGuuUGG- -5'
9447 5' -48.3 NC_002531.1 + 102396 0.66 0.999272
Target:  5'- aGGAccCCAAAgauaaGUCUacacccaACCCAcCCAGACCu -3'
miRNA:   3'- -CCUucGGUUU-----UAGG-------UGGGU-GGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 103563 1.15 0.006065
Target:  5'- aGGAAGCCAAAAUCCACCCACCAAACCc -3'
miRNA:   3'- -CCUUCGGUUUUAGGUGGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 103711 0.66 0.999288
Target:  5'- cGGAGCCAGAG-CCugCaGCUGAcCCg -3'
miRNA:   3'- cCUUCGGUUUUaGGugGgUGGUUuGG- -5'
9447 5' -48.3 NC_002531.1 + 103804 0.67 0.997245
Target:  5'- aGGggGCCcacuUCCACC-GCU--GCCg -3'
miRNA:   3'- -CCuuCGGuuuuAGGUGGgUGGuuUGG- -5'
9447 5' -48.3 NC_002531.1 + 113164 0.66 0.998404
Target:  5'- cGGuuuGCCAuuuGAGUgUGCCCuGCCAGGCUu -3'
miRNA:   3'- -CCuu-CGGU---UUUAgGUGGG-UGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 113376 0.66 0.998854
Target:  5'- -cAGGCUAuaaaaaacucauuaGAAUCCGCCCAUCu-GCUg -3'
miRNA:   3'- ccUUCGGU--------------UUUAGGUGGGUGGuuUGG- -5'
9447 5' -48.3 NC_002531.1 + 113454 0.67 0.996138
Target:  5'- uGGcAGCCGcaccagCCACUCGCCGcagacggucAGCCa -3'
miRNA:   3'- -CCuUCGGUuuua--GGUGGGUGGU---------UUGG- -5'
9447 5' -48.3 NC_002531.1 + 113481 0.67 0.997691
Target:  5'- uGGggGCCcuguauuUUCGCCaCACCuucuACCc -3'
miRNA:   3'- -CCuuCGGuuuu---AGGUGG-GUGGuu--UGG- -5'
9447 5' -48.3 NC_002531.1 + 114755 0.67 0.997245
Target:  5'- cGggGCCAc---CUAgCCACCAGcCCg -3'
miRNA:   3'- cCuuCGGUuuuaGGUgGGUGGUUuGG- -5'
9447 5' -48.3 NC_002531.1 + 115711 0.68 0.992831
Target:  5'- cGggGCCAGcccCCACCUACauaaauUAAACCc -3'
miRNA:   3'- cCuuCGGUUuuaGGUGGGUG------GUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 116745 0.68 0.992831
Target:  5'- cGGccGCCAAAAcaCCAUCCAC-AGACUa -3'
miRNA:   3'- -CCuuCGGUUUUa-GGUGGGUGgUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 117196 0.67 0.997852
Target:  5'- aGGAAGUgAAGAagauaaaaaacccuuUCCAugUCCACgAAGCCc -3'
miRNA:   3'- -CCUUCGgUUUU---------------AGGU--GGGUGgUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 118201 0.73 0.918304
Target:  5'- aGGGAGCagaGGGAUCUgaaggagaagGCCCAUgCAGACCa -3'
miRNA:   3'- -CCUUCGg--UUUUAGG----------UGGGUG-GUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 120235 0.67 0.99673
Target:  5'- uGGcGGGCCA---UCCACUagaACCAGagGCCa -3'
miRNA:   3'- -CC-UUCGGUuuuAGGUGGg--UGGUU--UGG- -5'
9447 5' -48.3 NC_002531.1 + 122990 0.73 0.924209
Target:  5'- aGGAgcucaaGGCCAugcUCCgcGCCUGCCGGGCCu -3'
miRNA:   3'- -CCU------UCGGUuuuAGG--UGGGUGGUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.