miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9447 5' -48.3 NC_002531.1 + 102396 0.66 0.999272
Target:  5'- aGGAccCCAAAgauaaGUCUacacccaACCCAcCCAGACCu -3'
miRNA:   3'- -CCUucGGUUU-----UAGG-------UGGGU-GGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 101761 0.7 0.980665
Target:  5'- gGGAAGCCAuauGAguaaggggggguuucAUCCACCCuaGCUuuACUg -3'
miRNA:   3'- -CCUUCGGU---UU---------------UAGGUGGG--UGGuuUGG- -5'
9447 5' -48.3 NC_002531.1 + 100895 0.69 0.990486
Target:  5'- uGGAA-CCAucg-CCACCCACCucauAAACUc -3'
miRNA:   3'- -CCUUcGGUuuuaGGUGGGUGG----UUUGG- -5'
9447 5' -48.3 NC_002531.1 + 100655 0.73 0.918304
Target:  5'- uGGAAGCCAuguGUCaccucaacuaugCACCUACUcAACCa -3'
miRNA:   3'- -CCUUCGGUuu-UAG------------GUGGGUGGuUUGG- -5'
9447 5' -48.3 NC_002531.1 + 98291 0.7 0.977317
Target:  5'- -uAGGCCAGcAUCaCAUCCACaGAACCu -3'
miRNA:   3'- ccUUCGGUUuUAG-GUGGGUGgUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 97526 0.68 0.99469
Target:  5'- -cGAGCgAu-AUCCAgCCACUAGACUa -3'
miRNA:   3'- ccUUCGgUuuUAGGUgGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 96721 0.66 0.998684
Target:  5'- --cAGCCAAAAagucUCCACCUcucCCAcgucAGCCu -3'
miRNA:   3'- ccuUCGGUUUU----AGGUGGGu--GGU----UUGG- -5'
9447 5' -48.3 NC_002531.1 + 94844 0.66 0.999191
Target:  5'- uGAAGCUAAAgacacuguggcauauGguggCC-CCCACaCGAGCCa -3'
miRNA:   3'- cCUUCGGUUU---------------Ua---GGuGGGUG-GUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 89925 0.69 0.989106
Target:  5'- gGGAuGCuCAAAuucacAUCCuCCCACCcuuGCCa -3'
miRNA:   3'- -CCUuCG-GUUU-----UAGGuGGGUGGuu-UGG- -5'
9447 5' -48.3 NC_002531.1 + 87494 0.68 0.995461
Target:  5'- uGGAcGCCAgcGAGUCCcucaagcaGCCaGCCGAACa -3'
miRNA:   3'- -CCUuCGGU--UUUAGG--------UGGgUGGUUUGg -5'
9447 5' -48.3 NC_002531.1 + 87254 0.84 0.40796
Target:  5'- aGGAGCCuaaAAAGUUCACCC-CCAAGCCg -3'
miRNA:   3'- cCUUCGG---UUUUAGGUGGGuGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 86406 0.67 0.996138
Target:  5'- uGGggGUC----UCCACCUAUCuauACCu -3'
miRNA:   3'- -CCuuCGGuuuuAGGUGGGUGGuu-UGG- -5'
9447 5' -48.3 NC_002531.1 + 86360 0.66 0.998684
Target:  5'- -aGAGCCAc-AUCCAuaaUCUGCCAGGCUg -3'
miRNA:   3'- ccUUCGGUuuUAGGU---GGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 84968 0.66 0.998921
Target:  5'- uGGAcAGCCu---UUCGCCCACUGGuugauGCCc -3'
miRNA:   3'- -CCU-UCGGuuuuAGGUGGGUGGUU-----UGG- -5'
9447 5' -48.3 NC_002531.1 + 84805 0.69 0.98896
Target:  5'- aGGAgaccacAGCCuuAcUCUGCCCgaaggacagcgccGCCAAACCa -3'
miRNA:   3'- -CCU------UCGGuuUuAGGUGGG-------------UGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 83778 0.68 0.995461
Target:  5'- -aGAGCCAAGAcCCcagagGCCCACUAAAa- -3'
miRNA:   3'- ccUUCGGUUUUaGG-----UGGGUGGUUUgg -5'
9447 5' -48.3 NC_002531.1 + 82969 0.67 0.997691
Target:  5'- uGGAGCUAuac-CCAUCUACCGGAgCg -3'
miRNA:   3'- cCUUCGGUuuuaGGUGGGUGGUUUgG- -5'
9447 5' -48.3 NC_002531.1 + 82897 0.66 0.999084
Target:  5'- cGGAGGCauucuugCCcauaGCCCACC--ACCg -3'
miRNA:   3'- -CCUUCGguuuua-GG----UGGGUGGuuUGG- -5'
9447 5' -48.3 NC_002531.1 + 82285 0.7 0.977317
Target:  5'- aGGAAGCCAcaAAuuuUCCucugcCCCACguAACUg -3'
miRNA:   3'- -CCUUCGGU--UUu--AGGu----GGGUGguUUGG- -5'
9447 5' -48.3 NC_002531.1 + 81698 0.68 0.995461
Target:  5'- -aAAGCCAcagcccgcagcAGGUCCACuccauCCACCGgcuAGCCa -3'
miRNA:   3'- ccUUCGGU-----------UUUAGGUG-----GGUGGU---UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.