Results 81 - 86 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 11439 | 0.66 | 0.998921 |
Target: 5'- aGGAAGCCu---UCgUACCCAacguaaAGGCCg -3' miRNA: 3'- -CCUUCGGuuuuAG-GUGGGUgg----UUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 10597 | 0.7 | 0.977317 |
Target: 5'- -cGGGCCGAGGcCCauGCCCACCAuagaacaagucaGGCCu -3' miRNA: 3'- ccUUCGGUUUUaGG--UGGGUGGU------------UUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 10057 | 0.75 | 0.827573 |
Target: 5'- gGGGccGGCCAGAGagUACCCACUGAAUCc -3' miRNA: 3'- -CCU--UCGGUUUUagGUGGGUGGUUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 5998 | 0.67 | 0.997691 |
Target: 5'- aGAAuuGCCuacauacCCACCUACCAuGACCa -3' miRNA: 3'- cCUU--CGGuuuua--GGUGGGUGGU-UUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 2818 | 0.68 | 0.99469 |
Target: 5'- ---cGCUAAucuGGUCUugCUACUAAACCg -3' miRNA: 3'- ccuuCGGUU---UUAGGugGGUGGUUUGG- -5' |
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9447 | 5' | -48.3 | NC_002531.1 | + | 1418 | 0.67 | 0.996138 |
Target: 5'- uGAAGCCAgGAAUCUuuucuCCCGCUuGugCa -3' miRNA: 3'- cCUUCGGU-UUUAGGu----GGGUGGuUugG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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