miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9447 5' -48.3 NC_002531.1 + 22005 0.67 0.996138
Target:  5'- aGGAGGUCAAAGUUgcaGCCCA---GACCc -3'
miRNA:   3'- -CCUUCGGUUUUAGg--UGGGUgguUUGG- -5'
9447 5' -48.3 NC_002531.1 + 83778 0.68 0.995461
Target:  5'- -aGAGCCAAGAcCCcagagGCCCACUAAAa- -3'
miRNA:   3'- ccUUCGGUUUUaGG-----UGGGUGGUUUgg -5'
9447 5' -48.3 NC_002531.1 + 81698 0.68 0.995461
Target:  5'- -aAAGCCAcagcccgcagcAGGUCCACuccauCCACCGgcuAGCCa -3'
miRNA:   3'- ccUUCGGU-----------UUUAGGUG-----GGUGGU---UUGG- -5'
9447 5' -48.3 NC_002531.1 + 97526 0.68 0.99469
Target:  5'- -cGAGCgAu-AUCCAgCCACUAGACUa -3'
miRNA:   3'- ccUUCGgUuuUAGGUgGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 35444 0.68 0.99469
Target:  5'- aGGAGCUGAGGUUCAgCCACCuGGUCg -3'
miRNA:   3'- cCUUCGGUUUUAGGUgGGUGGuUUGG- -5'
9447 5' -48.3 NC_002531.1 + 115711 0.68 0.992831
Target:  5'- cGggGCCAGcccCCACCUACauaaauUAAACCc -3'
miRNA:   3'- cCuuCGGUUuuaGGUGGGUG------GUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 61473 0.68 0.991724
Target:  5'- uGGAAGCCAccaa-CACCCcaaaguaaaauCCAAACUg -3'
miRNA:   3'- -CCUUCGGUuuuagGUGGGu----------GGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 100895 0.69 0.990486
Target:  5'- uGGAA-CCAucg-CCACCCACCucauAAACUc -3'
miRNA:   3'- -CCUUcGGUuuuaGGUGGGUGG----UUUGG- -5'
9447 5' -48.3 NC_002531.1 + 20227 0.69 0.990486
Target:  5'- ----aCCA--GUCCACUgGCCAGGCCu -3'
miRNA:   3'- ccuucGGUuuUAGGUGGgUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 89925 0.69 0.989106
Target:  5'- gGGAuGCuCAAAuucacAUCCuCCCACCcuuGCCa -3'
miRNA:   3'- -CCUuCG-GUUU-----UAGGuGGGUGGuu-UGG- -5'
9447 5' -48.3 NC_002531.1 + 69494 0.66 0.998684
Target:  5'- aGGcGGCCugcAUUCACCaagACCAcGCCa -3'
miRNA:   3'- -CCuUCGGuuuUAGGUGGg--UGGUuUGG- -5'
9447 5' -48.3 NC_002531.1 + 113164 0.66 0.998404
Target:  5'- cGGuuuGCCAuuuGAGUgUGCCCuGCCAGGCUu -3'
miRNA:   3'- -CCuu-CGGU---UUUAgGUGGG-UGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 117196 0.67 0.997852
Target:  5'- aGGAAGUgAAGAagauaaaaaacccuuUCCAugUCCACgAAGCCc -3'
miRNA:   3'- -CCUUCGgUUUU---------------AGGU--GGGUGgUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 39196 0.67 0.997691
Target:  5'- aGGGuAGUCuu--UCCugCCGCCAuacACCc -3'
miRNA:   3'- -CCU-UCGGuuuuAGGugGGUGGUu--UGG- -5'
9447 5' -48.3 NC_002531.1 + 96721 0.66 0.998684
Target:  5'- --cAGCCAAAAagucUCCACCUcucCCAcgucAGCCu -3'
miRNA:   3'- ccuUCGGUUUU----AGGUGGGu--GGU----UUGG- -5'
9447 5' -48.3 NC_002531.1 + 69736 0.66 0.998921
Target:  5'- gGGguGCUguAAUuacuaugcaCCGCCCGCCAagaAACCu -3'
miRNA:   3'- -CCuuCGGuuUUA---------GGUGGGUGGU---UUGG- -5'
9447 5' -48.3 NC_002531.1 + 82897 0.66 0.999084
Target:  5'- cGGAGGCauucuugCCcauaGCCCACC--ACCg -3'
miRNA:   3'- -CCUUCGguuuua-GG----UGGGUGGuuUGG- -5'
9447 5' -48.3 NC_002531.1 + 58126 0.66 0.999121
Target:  5'- uGGGuuCCAAAgcgGUCC-CCCACgGAcACCg -3'
miRNA:   3'- -CCUucGGUUU---UAGGuGGGUGgUU-UGG- -5'
9447 5' -48.3 NC_002531.1 + 94844 0.66 0.999191
Target:  5'- uGAAGCUAAAgacacuguggcauauGguggCC-CCCACaCGAGCCa -3'
miRNA:   3'- cCUUCGGUUU---------------Ua---GGuGGGUG-GUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 103563 1.15 0.006065
Target:  5'- aGGAAGCCAAAAUCCACCCACCAAACCc -3'
miRNA:   3'- -CCUUCGGUUUUAGGUGGGUGGUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.