miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9447 5' -48.3 NC_002531.1 + 23539 0.67 0.997245
Target:  5'- aGAGGCCAAcAUUC-CCCACaauGACa -3'
miRNA:   3'- cCUUCGGUUuUAGGuGGGUGgu-UUGg -5'
9447 5' -48.3 NC_002531.1 + 82897 0.66 0.999084
Target:  5'- cGGAGGCauucuugCCcauaGCCCACC--ACCg -3'
miRNA:   3'- -CCUUCGguuuua-GG----UGGGUGGuuUGG- -5'
9447 5' -48.3 NC_002531.1 + 87254 0.84 0.40796
Target:  5'- aGGAGCCuaaAAAGUUCACCC-CCAAGCCg -3'
miRNA:   3'- cCUUCGG---UUUUAGGUGGGuGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 130002 0.71 0.971222
Target:  5'- aGGAGGCCuAGGUCCuuacgugcuaccUCCACCuuuACCu -3'
miRNA:   3'- -CCUUCGGuUUUAGGu-----------GGGUGGuu-UGG- -5'
9447 5' -48.3 NC_002531.1 + 2818 0.68 0.99469
Target:  5'- ---cGCUAAucuGGUCUugCUACUAAACCg -3'
miRNA:   3'- ccuuCGGUU---UUAGGugGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 58126 0.66 0.999121
Target:  5'- uGGGuuCCAAAgcgGUCC-CCCACgGAcACCg -3'
miRNA:   3'- -CCUucGGUUU---UAGGuGGGUGgUU-UGG- -5'
9447 5' -48.3 NC_002531.1 + 98291 0.7 0.977317
Target:  5'- -uAGGCCAGcAUCaCAUCCACaGAACCu -3'
miRNA:   3'- ccUUCGGUUuUAG-GUGGGUGgUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 94844 0.66 0.999191
Target:  5'- uGAAGCUAAAgacacuguggcauauGguggCC-CCCACaCGAGCCa -3'
miRNA:   3'- cCUUCGGUUU---------------Ua---GGuGGGUG-GUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 35326 0.66 0.999288
Target:  5'- cGAAGCCcAGGUCgGCUggguCACUGGACUa -3'
miRNA:   3'- cCUUCGGuUUUAGgUGG----GUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 116745 0.68 0.992831
Target:  5'- cGGccGCCAAAAcaCCAUCCAC-AGACUa -3'
miRNA:   3'- -CCuuCGGUUUUa-GGUGGGUGgUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 56674 0.73 0.918304
Target:  5'- --cAGCCGuGAga-ACCCACCAGGCCu -3'
miRNA:   3'- ccuUCGGUuUUaggUGGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 113164 0.66 0.998404
Target:  5'- cGGuuuGCCAuuuGAGUgUGCCCuGCCAGGCUu -3'
miRNA:   3'- -CCuu-CGGU---UUUAgGUGGG-UGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 69736 0.66 0.998921
Target:  5'- gGGguGCUguAAUuacuaugcaCCGCCCGCCAagaAACCu -3'
miRNA:   3'- -CCuuCGGuuUUA---------GGUGGGUGGU---UUGG- -5'
9447 5' -48.3 NC_002531.1 + 21927 0.7 0.981981
Target:  5'- gGGAGGCUA--GUgCAUCC-CCAAACUu -3'
miRNA:   3'- -CCUUCGGUuuUAgGUGGGuGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 129556 0.71 0.965424
Target:  5'- cGGGccugcAGCCAAGA---ACCCACCAaaaGACCc -3'
miRNA:   3'- -CCU-----UCGGUUUUaggUGGGUGGU---UUGG- -5'
9447 5' -48.3 NC_002531.1 + 103563 1.15 0.006065
Target:  5'- aGGAAGCCAAAAUCCACCCACCAAACCc -3'
miRNA:   3'- -CCUUCGGUUUUAGGUGGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 20227 0.69 0.990486
Target:  5'- ----aCCA--GUCCACUgGCCAGGCCu -3'
miRNA:   3'- ccuucGGUuuUAGGUGGgUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 82969 0.67 0.997691
Target:  5'- uGGAGCUAuac-CCAUCUACCGGAgCg -3'
miRNA:   3'- cCUUCGGUuuuaGGUGGGUGGUUUgG- -5'
9447 5' -48.3 NC_002531.1 + 103804 0.67 0.997245
Target:  5'- aGGggGCCcacuUCCACC-GCU--GCCg -3'
miRNA:   3'- -CCuuCGGuuuuAGGUGGgUGGuuUGG- -5'
9447 5' -48.3 NC_002531.1 + 114755 0.67 0.997245
Target:  5'- cGggGCCAc---CUAgCCACCAGcCCg -3'
miRNA:   3'- cCuuCGGUuuuaGGUgGGUGGUUuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.