Results 41 - 60 of 86 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 22005 | 0.67 | 0.996138 |
Target: 5'- aGGAGGUCAAAGUUgcaGCCCA---GACCc -3' miRNA: 3'- -CCUUCGGUUUUAGg--UGGGUgguUUGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 5998 | 0.67 | 0.997691 |
Target: 5'- aGAAuuGCCuacauacCCACCUACCAuGACCa -3' miRNA: 3'- cCUU--CGGuuuua--GGUGGGUGGU-UUGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 100655 | 0.73 | 0.918304 |
Target: 5'- uGGAAGCCAuguGUCaccucaacuaugCACCUACUcAACCa -3' miRNA: 3'- -CCUUCGGUuu-UAG------------GUGGGUGGuUUGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 10057 | 0.75 | 0.827573 |
Target: 5'- gGGGccGGCCAGAGagUACCCACUGAAUCc -3' miRNA: 3'- -CCU--UCGGUUUUagGUGGGUGGUUUGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 30704 | 0.66 | 0.999121 |
Target: 5'- --cAGUCAcGAaCCauuGCUCACCAAACCa -3' miRNA: 3'- ccuUCGGUuUUaGG---UGGGUGGUUUGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 84968 | 0.66 | 0.998921 |
Target: 5'- uGGAcAGCCu---UUCGCCCACUGGuugauGCCc -3' miRNA: 3'- -CCU-UCGGuuuuAGGUGGGUGGUU-----UGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 124684 | 0.67 | 0.996138 |
Target: 5'- ---uGCCAAcuUCCACCCGCauuACa -3' miRNA: 3'- ccuuCGGUUuuAGGUGGGUGguuUGg -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 58295 | 0.67 | 0.99673 |
Target: 5'- gGGGAGCUuGAGaCCACCCucacCCAAugGCg -3' miRNA: 3'- -CCUUCGGuUUUaGGUGGGu---GGUU--UGg -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 47052 | 0.67 | 0.997245 |
Target: 5'- gGGAuGGCCuGAGAUCCagGCCCAUggauaacaUGAACCu -3' miRNA: 3'- -CCU-UCGG-UUUUAGG--UGGGUG--------GUUUGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 103804 | 0.67 | 0.997245 |
Target: 5'- aGGggGCCcacuUCCACC-GCU--GCCg -3' miRNA: 3'- -CCuuCGGuuuuAGGUGGgUGGuuUGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 114755 | 0.67 | 0.997245 |
Target: 5'- cGggGCCAc---CUAgCCACCAGcCCg -3' miRNA: 3'- cCuuCGGUuuuaGGUgGGUGGUUuGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 82969 | 0.67 | 0.997691 |
Target: 5'- uGGAGCUAuac-CCAUCUACCGGAgCg -3' miRNA: 3'- cCUUCGGUuuuaGGUGGGUGGUUUgG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 83778 | 0.68 | 0.995461 |
Target: 5'- -aGAGCCAAGAcCCcagagGCCCACUAAAa- -3' miRNA: 3'- ccUUCGGUUUUaGG-----UGGGUGGUUUgg -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 1418 | 0.67 | 0.996138 |
Target: 5'- uGAAGCCAgGAAUCUuuucuCCCGCUuGugCa -3' miRNA: 3'- cCUUCGGU-UUUAGGu----GGGUGGuUugG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 20227 | 0.69 | 0.990486 |
Target: 5'- ----aCCA--GUCCACUgGCCAGGCCu -3' miRNA: 3'- ccuucGGUuuUAGGUGGgUGGUUUGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 89925 | 0.69 | 0.989106 |
Target: 5'- gGGAuGCuCAAAuucacAUCCuCCCACCcuuGCCa -3' miRNA: 3'- -CCUuCG-GUUU-----UAGGuGGGUGGuu-UGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 84805 | 0.69 | 0.98896 |
Target: 5'- aGGAgaccacAGCCuuAcUCUGCCCgaaggacagcgccGCCAAACCa -3' miRNA: 3'- -CCU------UCGGuuUuAGGUGGG-------------UGGUUUGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 54232 | 0.7 | 0.981981 |
Target: 5'- aGGAAGUguA---CCACCCGCUAA-CCg -3' miRNA: 3'- -CCUUCGguUuuaGGUGGGUGGUUuGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 17334 | 0.7 | 0.979749 |
Target: 5'- --cAGCCuGAAAUCCAU--GCCGAGCCg -3' miRNA: 3'- ccuUCGG-UUUUAGGUGggUGGUUUGG- -5' |
|||||||
9447 | 5' | -48.3 | NC_002531.1 | + | 124021 | 0.66 | 0.998921 |
Target: 5'- aGGAGGCCAAGugaCACUCGuaAAGCa -3' miRNA: 3'- -CCUUCGGUUUuagGUGGGUggUUUGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home