miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9447 5' -48.3 NC_002531.1 + 86360 0.66 0.998684
Target:  5'- -aGAGCCAc-AUCCAuaaUCUGCCAGGCUg -3'
miRNA:   3'- ccUUCGGUuuUAGGU---GGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 21011 0.66 0.998658
Target:  5'- ---uGCCAAGAUUgcaaacaUACCCACCAGGa- -3'
miRNA:   3'- ccuuCGGUUUUAG-------GUGGGUGGUUUgg -5'
9447 5' -48.3 NC_002531.1 + 113164 0.66 0.998404
Target:  5'- cGGuuuGCCAuuuGAGUgUGCCCuGCCAGGCUu -3'
miRNA:   3'- -CCuu-CGGU---UUUAgGUGGG-UGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 24953 0.67 0.998075
Target:  5'- uGGAcAGCUAAAuaacuagCCACCaugCAgCAGACCa -3'
miRNA:   3'- -CCU-UCGGUUUua-----GGUGG---GUgGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 23825 0.67 0.998075
Target:  5'- -aAAGCCucuAAAUCUuccgGCCCAUCucAGCCa -3'
miRNA:   3'- ccUUCGGu--UUUAGG----UGGGUGGu-UUGG- -5'
9447 5' -48.3 NC_002531.1 + 61950 0.67 0.998039
Target:  5'- ---cGCCAuuAUCCACUgagauagCGCCAuaaGGCCa -3'
miRNA:   3'- ccuuCGGUuuUAGGUGG-------GUGGU---UUGG- -5'
9447 5' -48.3 NC_002531.1 + 117196 0.67 0.997852
Target:  5'- aGGAAGUgAAGAagauaaaaaacccuuUCCAugUCCACgAAGCCc -3'
miRNA:   3'- -CCUUCGgUUUU---------------AGGU--GGGUGgUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 5998 0.67 0.997691
Target:  5'- aGAAuuGCCuacauacCCACCUACCAuGACCa -3'
miRNA:   3'- cCUU--CGGuuuua--GGUGGGUGGU-UUGG- -5'
9447 5' -48.3 NC_002531.1 + 39196 0.67 0.997691
Target:  5'- aGGGuAGUCuu--UCCugCCGCCAuacACCc -3'
miRNA:   3'- -CCU-UCGGuuuuAGGugGGUGGUu--UGG- -5'
9447 5' -48.3 NC_002531.1 + 113481 0.67 0.997691
Target:  5'- uGGggGCCcuguauuUUCGCCaCACCuucuACCc -3'
miRNA:   3'- -CCuuCGGuuuu---AGGUGG-GUGGuu--UGG- -5'
9447 5' -48.3 NC_002531.1 + 82969 0.67 0.997691
Target:  5'- uGGAGCUAuac-CCAUCUACCGGAgCg -3'
miRNA:   3'- cCUUCGGUuuuaGGUGGGUGGUUUgG- -5'
9447 5' -48.3 NC_002531.1 + 114755 0.67 0.997245
Target:  5'- cGggGCCAc---CUAgCCACCAGcCCg -3'
miRNA:   3'- cCuuCGGUuuuaGGUgGGUGGUUuGG- -5'
9447 5' -48.3 NC_002531.1 + 103804 0.67 0.997245
Target:  5'- aGGggGCCcacuUCCACC-GCU--GCCg -3'
miRNA:   3'- -CCuuCGGuuuuAGGUGGgUGGuuUGG- -5'
9447 5' -48.3 NC_002531.1 + 47052 0.67 0.997245
Target:  5'- gGGAuGGCCuGAGAUCCagGCCCAUggauaacaUGAACCu -3'
miRNA:   3'- -CCU-UCGG-UUUUAGG--UGGGUG--------GUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 23539 0.67 0.997245
Target:  5'- aGAGGCCAAcAUUC-CCCACaauGACa -3'
miRNA:   3'- cCUUCGGUUuUAGGuGGGUGgu-UUGg -5'
9447 5' -48.3 NC_002531.1 + 120235 0.67 0.99673
Target:  5'- uGGcGGGCCA---UCCACUagaACCAGagGCCa -3'
miRNA:   3'- -CC-UUCGGUuuuAGGUGGg--UGGUU--UGG- -5'
9447 5' -48.3 NC_002531.1 + 58295 0.67 0.99673
Target:  5'- gGGGAGCUuGAGaCCACCCucacCCAAugGCg -3'
miRNA:   3'- -CCUUCGGuUUUaGGUGGGu---GGUU--UGg -5'
9447 5' -48.3 NC_002531.1 + 124684 0.67 0.996138
Target:  5'- ---uGCCAAcuUCCACCCGCauuACa -3'
miRNA:   3'- ccuuCGGUUuuAGGUGGGUGguuUGg -5'
9447 5' -48.3 NC_002531.1 + 1418 0.67 0.996138
Target:  5'- uGAAGCCAgGAAUCUuuucuCCCGCUuGugCa -3'
miRNA:   3'- cCUUCGGU-UUUAGGu----GGGUGGuUugG- -5'
9447 5' -48.3 NC_002531.1 + 22005 0.67 0.996138
Target:  5'- aGGAGGUCAAAGUUgcaGCCCA---GACCc -3'
miRNA:   3'- -CCUUCGGUUUUAGg--UGGGUgguUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.