miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9449 3' -47.6 NC_002531.1 + 58741 0.67 0.998083
Target:  5'- --cGGUGgaucaccuACAugACU--UGGACCGGGa -3'
miRNA:   3'- cauUCAU--------UGUugUGAugACCUGGCCC- -5'
9449 3' -47.6 NC_002531.1 + 111377 0.68 0.997698
Target:  5'- uGUAGGUGACAAggaaaACUGCUGGuCCc-- -3'
miRNA:   3'- -CAUUCAUUGUUg----UGAUGACCuGGccc -5'
9449 3' -47.6 NC_002531.1 + 121651 0.68 0.997698
Target:  5'- -aGAGgcAUggUACUgccguGCUGGGCCaGGGc -3'
miRNA:   3'- caUUCauUGuuGUGA-----UGACCUGG-CCC- -5'
9449 3' -47.6 NC_002531.1 + 49952 0.68 0.996139
Target:  5'- cGUcAGUaAACAGC-CUGCUGGugCaGGa -3'
miRNA:   3'- -CAuUCA-UUGUUGuGAUGACCugGcCC- -5'
9449 3' -47.6 NC_002531.1 + 90835 0.69 0.993803
Target:  5'- aUAGGccGCcACGCUcACUGG-CCGGGg -3'
miRNA:   3'- cAUUCauUGuUGUGA-UGACCuGGCCC- -5'
9449 3' -47.6 NC_002531.1 + 2261 0.7 0.987347
Target:  5'- aUAAGUGuACAACACUucaaaacuacaacACUGGGCCcccGGa -3'
miRNA:   3'- cAUUCAU-UGUUGUGA-------------UGACCUGGc--CC- -5'
9449 3' -47.6 NC_002531.1 + 13216 0.71 0.971589
Target:  5'- aGUAAGUGuuGCAGUugUACUGGAUgacgUGGGa -3'
miRNA:   3'- -CAUUCAU--UGUUGugAUGACCUG----GCCC- -5'
9449 3' -47.6 NC_002531.1 + 96207 0.72 0.96512
Target:  5'- cGUAGGccACGACGCUACUGGcugauGCCGa- -3'
miRNA:   3'- -CAUUCauUGUUGUGAUGACC-----UGGCcc -5'
9449 3' -47.6 NC_002531.1 + 21956 0.77 0.807296
Target:  5'- -gGGGcUAGCAaagagcACACUGCUGGugUGGGa -3'
miRNA:   3'- caUUC-AUUGU------UGUGAUGACCugGCCC- -5'
9449 3' -47.6 NC_002531.1 + 10178 0.79 0.705923
Target:  5'- uGgcAGUGGCAGCACaaccagACgGGGCCGGGu -3'
miRNA:   3'- -CauUCAUUGUUGUGa-----UGaCCUGGCCC- -5'
9449 3' -47.6 NC_002531.1 + 110008 1.11 0.013381
Target:  5'- gGUAAGUAACAACACUACUGGACCGGGc -3'
miRNA:   3'- -CAUUCAUUGUUGUGAUGACCUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.