miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9449 5' -60 NC_002531.1 + 44166 0.66 0.748528
Target:  5'- aGCaCUUGGUCCgcaGC-GGCCg-CAGGGa -3'
miRNA:   3'- -CG-GGACCAGGau-UGcCCGGagGUCCC- -5'
9449 5' -60 NC_002531.1 + 49295 0.66 0.748528
Target:  5'- cCCCUGGgCCUcucaAAaaGGCuCUCUGGGGg -3'
miRNA:   3'- cGGGACCaGGA----UUgcCCG-GAGGUCCC- -5'
9449 5' -60 NC_002531.1 + 117083 0.66 0.739057
Target:  5'- cUCCUGGaCCUGACGaucuagauGGUCguccgggaagCCAGGGg -3'
miRNA:   3'- cGGGACCaGGAUUGC--------CCGGa---------GGUCCC- -5'
9449 5' -60 NC_002531.1 + 12284 0.66 0.739057
Target:  5'- aGUCCUGGacuuuaguuuuuUCCUGGgGGGCCUCa---- -3'
miRNA:   3'- -CGGGACC------------AGGAUUgCCCGGAGguccc -5'
9449 5' -60 NC_002531.1 + 130189 0.66 0.739057
Target:  5'- aCCCc---CCUGACGGGgCggCCGGGGg -3'
miRNA:   3'- cGGGaccaGGAUUGCCCgGa-GGUCCC- -5'
9449 5' -60 NC_002531.1 + 119150 0.66 0.738105
Target:  5'- gGCCCcucUGGUCCcu-CGGGgccuucuCCUUCAGGu -3'
miRNA:   3'- -CGGG---ACCAGGauuGCCC-------GGAGGUCCc -5'
9449 5' -60 NC_002531.1 + 123375 0.66 0.729497
Target:  5'- cGCgCCUGGcaggguauagUCCUGG-GGGuUCUCUGGGGg -3'
miRNA:   3'- -CG-GGACC----------AGGAUUgCCC-GGAGGUCCC- -5'
9449 5' -60 NC_002531.1 + 118922 0.66 0.729497
Target:  5'- gGCCCcucUGGUCCcucaGGGCCUucuccuUCAGGu -3'
miRNA:   3'- -CGGG---ACCAGGauugCCCGGA------GGUCCc -5'
9449 5' -60 NC_002531.1 + 118796 0.66 0.729497
Target:  5'- gGCCCcucUGGUCCcucaGGGCCUucuccuUCAGGu -3'
miRNA:   3'- -CGGG---ACCAGGauugCCCGGA------GGUCCc -5'
9449 5' -60 NC_002531.1 + 118665 0.66 0.729497
Target:  5'- gGCCCcucUGGUCCcucaGGGCCUucuccuUCAGGu -3'
miRNA:   3'- -CGGG---ACCAGGauugCCCGGA------GGUCCc -5'
9449 5' -60 NC_002531.1 + 118539 0.66 0.729497
Target:  5'- gGCCCcucUGGUCCcucaGGGCCUucuccuUCAGGu -3'
miRNA:   3'- -CGGG---ACCAGGauugCCCGGA------GGUCCc -5'
9449 5' -60 NC_002531.1 + 118473 0.66 0.729497
Target:  5'- gGCCCcucUGGUCCcucaGGGCCUucuccuUCAGGu -3'
miRNA:   3'- -CGGG---ACCAGGauugCCCGGA------GGUCCc -5'
9449 5' -60 NC_002531.1 + 57399 0.66 0.719858
Target:  5'- uGCCCUGGaugugguugcugUUCU-ACGGGCC-CCGGu- -3'
miRNA:   3'- -CGGGACC------------AGGAuUGCCCGGaGGUCcc -5'
9449 5' -60 NC_002531.1 + 118028 0.67 0.670755
Target:  5'- -aCCUGGUCUgcAUGGGCCUUCu--- -3'
miRNA:   3'- cgGGACCAGGauUGCCCGGAGGuccc -5'
9449 5' -60 NC_002531.1 + 129471 0.67 0.640868
Target:  5'- aGCCCcuaGGUCCUugGGCGGggucuuGCCUgCAGGc -3'
miRNA:   3'- -CGGGa--CCAGGA--UUGCC------CGGAgGUCCc -5'
9449 5' -60 NC_002531.1 + 121489 0.67 0.640868
Target:  5'- uGCCCUGGaCCcagcACGGcaguaccauGCCUCugCAGGGg -3'
miRNA:   3'- -CGGGACCaGGau--UGCC---------CGGAG--GUCCC- -5'
9449 5' -60 NC_002531.1 + 119094 0.68 0.61092
Target:  5'- cCCCUGGUCCcu-CGGGCC-CCu--- -3'
miRNA:   3'- cGGGACCAGGauuGCCCGGaGGuccc -5'
9449 5' -60 NC_002531.1 + 34539 0.69 0.532193
Target:  5'- cGUCCUGGgg--GGCGGGgggugCUCCAGGGc -3'
miRNA:   3'- -CGGGACCaggaUUGCCCg----GAGGUCCC- -5'
9449 5' -60 NC_002531.1 + 119446 0.69 0.522578
Target:  5'- gGCCCaGGUgCUcaaGAgGGGCCcgagggaCCAGGGg -3'
miRNA:   3'- -CGGGaCCAgGA---UUgCCCGGa------GGUCCC- -5'
9449 5' -60 NC_002531.1 + 117959 0.7 0.51303
Target:  5'- -aCCUGGUCCgcAUGGGCCUUCu--- -3'
miRNA:   3'- cgGGACCAGGauUGCCCGGAGGuccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.