miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9450 3' -48.1 NC_002531.1 + 105770 0.66 0.998212
Target:  5'- gGCAAcCGGCUCaaACCUGCcGGCGAc-- -3'
miRNA:   3'- -CGUU-GUCGAGg-UGGAUGaCUGUUuaa -5'
9450 3' -48.1 NC_002531.1 + 128262 0.66 0.997841
Target:  5'- aGCAACAG-UCCAUCU-CaGACAAAg- -3'
miRNA:   3'- -CGUUGUCgAGGUGGAuGaCUGUUUaa -5'
9450 3' -48.1 NC_002531.1 + 128366 0.66 0.997841
Target:  5'- aGCAACAG-UCCAUCU-CaGACAAAg- -3'
miRNA:   3'- -CGUUGUCgAGGUGGAuGaCUGUUUaa -5'
9450 3' -48.1 NC_002531.1 + 128314 0.66 0.997841
Target:  5'- aGCAACAG-UCCAUCU-CaGACAAAg- -3'
miRNA:   3'- -CGUUGUCgAGGUGGAuGaCUGUUUaa -5'
9450 3' -48.1 NC_002531.1 + 128210 0.66 0.997841
Target:  5'- aGCAACAG-UCCAUCU-CaGACAAAg- -3'
miRNA:   3'- -CGUUGUCgAGGUGGAuGaCUGUUUaa -5'
9450 3' -48.1 NC_002531.1 + 36873 0.66 0.997408
Target:  5'- aGCuAUGGUagCCGCCUGCUGACc---- -3'
miRNA:   3'- -CGuUGUCGa-GGUGGAUGACUGuuuaa -5'
9450 3' -48.1 NC_002531.1 + 42707 0.66 0.997408
Target:  5'- uGCAG-AGCgccugCCACCccugGCUGACGAGc- -3'
miRNA:   3'- -CGUUgUCGa----GGUGGa---UGACUGUUUaa -5'
9450 3' -48.1 NC_002531.1 + 31022 0.66 0.996904
Target:  5'- aGUAACGGCUCUACUcagGCUG-CAu--- -3'
miRNA:   3'- -CGUUGUCGAGGUGGa--UGACuGUuuaa -5'
9450 3' -48.1 NC_002531.1 + 92239 0.66 0.996904
Target:  5'- aGUGACAGCUCUgacucauggGCCUGCUuACAu--- -3'
miRNA:   3'- -CGUUGUCGAGG---------UGGAUGAcUGUuuaa -5'
9450 3' -48.1 NC_002531.1 + 21967 0.67 0.99464
Target:  5'- aGUAACuagagcuguacuggAGCUCCugCUGCgaGACGAGg- -3'
miRNA:   3'- -CGUUG--------------UCGAGGugGAUGa-CUGUUUaa -5'
9450 3' -48.1 NC_002531.1 + 13069 0.67 0.994019
Target:  5'- aCAACuGCaaCACUUACUGGCAAGc- -3'
miRNA:   3'- cGUUGuCGagGUGGAUGACUGUUUaa -5'
9450 3' -48.1 NC_002531.1 + 10575 0.67 0.994019
Target:  5'- aCAAUAGgUCCAUUUACUGGCu---- -3'
miRNA:   3'- cGUUGUCgAGGUGGAUGACUGuuuaa -5'
9450 3' -48.1 NC_002531.1 + 17440 0.67 0.994019
Target:  5'- uGCu-CAGC-CCAUCUACUGGCu---- -3'
miRNA:   3'- -CGuuGUCGaGGUGGAUGACUGuuuaa -5'
9450 3' -48.1 NC_002531.1 + 83273 0.67 0.994019
Target:  5'- aGCAucuACAGC-CUauGCCUACUGAuCAGAg- -3'
miRNA:   3'- -CGU---UGUCGaGG--UGGAUGACU-GUUUaa -5'
9450 3' -48.1 NC_002531.1 + 11859 0.68 0.991922
Target:  5'- uGCGAaGGCUCUACCUGcCUGcggucaGCGAGUa -3'
miRNA:   3'- -CGUUgUCGAGGUGGAU-GAC------UGUUUAa -5'
9450 3' -48.1 NC_002531.1 + 74467 0.68 0.991922
Target:  5'- cGCAGCAGCaCCGCuCUGCaGugGAc-- -3'
miRNA:   3'- -CGUUGUCGaGGUG-GAUGaCugUUuaa -5'
9450 3' -48.1 NC_002531.1 + 46459 0.69 0.98601
Target:  5'- uCAACaAGCUCCucacCCUACUGGgGGAa- -3'
miRNA:   3'- cGUUG-UCGAGGu---GGAUGACUgUUUaa -5'
9450 3' -48.1 NC_002531.1 + 92478 0.69 0.982024
Target:  5'- uCAACAGCgCCAUCUAUUGAUg---- -3'
miRNA:   3'- cGUUGUCGaGGUGGAUGACUGuuuaa -5'
9450 3' -48.1 NC_002531.1 + 107524 0.69 0.979737
Target:  5'- aCAcUAGCUCCcuguGCCUGCUGuGCGAGUg -3'
miRNA:   3'- cGUuGUCGAGG----UGGAUGAC-UGUUUAa -5'
9450 3' -48.1 NC_002531.1 + 115910 1.08 0.013518
Target:  5'- aGCAACAGCUCCACCUACUGACAAAUUu -3'
miRNA:   3'- -CGUUGUCGAGGUGGAUGACUGUUUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.