Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9452 | 5' | -56.2 | NC_002531.1 | + | 15861 | 0.66 | 0.826722 |
Target: 5'- cGGAGAGGAGGuGCCCACaaa-GCCu- -3' miRNA: 3'- uUCUCUUCUCC-CGGGUGaaccUGGuc -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 100758 | 0.67 | 0.762002 |
Target: 5'- uGGuGggGAGGGUCCACU-GGugUu- -3' miRNA: 3'- uUCuCuuCUCCCGGGUGAaCCugGuc -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 103788 | 0.66 | 0.851848 |
Target: 5'- uGGGGGcgcugccuccAGGGGGCCCACUUccACCGc -3' miRNA: 3'- uUCUCU----------UCUCCCGGGUGAAccUGGUc -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 109812 | 0.66 | 0.851848 |
Target: 5'- uAGAGGcccuGGA-GGCCCGUUaGGACCAGg -3' miRNA: 3'- uUCUCU----UCUcCCGGGUGAaCCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 118045 | 0.73 | 0.437879 |
Target: 5'- --aAGGAGAaGGCCCAUgcGGACCAGg -3' miRNA: 3'- uucUCUUCUcCCGGGUGaaCCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 118084 | 0.66 | 0.859814 |
Target: 5'- cAGAuGAAGAcgGGGaCCC-CgagGGACCAGa -3' miRNA: 3'- uUCU-CUUCU--CCC-GGGuGaa-CCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 118114 | 0.73 | 0.437879 |
Target: 5'- --aAGGAGAaGGCCCAUgcGGACCAGg -3' miRNA: 3'- uucUCUUCUcCCGGGUGaaCCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 118194 | 0.7 | 0.639146 |
Target: 5'- aGAGGGAucugaaGGAGaaGGCCCAUgcagaccaggUGGGCCAGa -3' miRNA: 3'- -UUCUCU------UCUC--CCGGGUGa---------ACCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 118252 | 0.72 | 0.495205 |
Target: 5'- --aAGGAGAaGGCCCAagUGGACCAGg -3' miRNA: 3'- uucUCUUCUcCCGGGUgaACCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 118290 | 0.66 | 0.835294 |
Target: 5'- uGGAcccGAAGAaGGCUCAagUGGACCAGg -3' miRNA: 3'- uUCU---CUUCUcCCGGGUgaACCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 118382 | 0.67 | 0.771688 |
Target: 5'- cAAGAGGuccccGAGGGaCCAaagGGGCCAGa -3' miRNA: 3'- -UUCUCUu----CUCCCgGGUgaaCCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 118423 | 0.68 | 0.711952 |
Target: 5'- cAGAGggGccugaAGGagauaGCCCAgaUGGGCCAGg -3' miRNA: 3'- uUCUCuuC-----UCC-----CGGGUgaACCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 118541 | 0.75 | 0.335699 |
Target: 5'- gAAGaAGAcGAGGGCCC-CgagGGACCAGa -3' miRNA: 3'- -UUC-UCUuCUCCCGGGuGaa-CCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 118579 | 0.67 | 0.771688 |
Target: 5'- cAGGuGcucAAGAgGGGCCCGag-GGACCAGa -3' miRNA: 3'- -UUCuC---UUCU-CCCGGGUgaaCCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 118634 | 0.73 | 0.456577 |
Target: 5'- -uGAGGAGAaGGCCCugagGGACCAGa -3' miRNA: 3'- uuCUCUUCUcCCGGGugaaCCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 118665 | 0.67 | 0.771688 |
Target: 5'- --aAGGAGAaGGCCC-CgagGGACCAGa -3' miRNA: 3'- uucUCUUCUcCCGGGuGaa-CCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 118698 | 0.67 | 0.781244 |
Target: 5'- --aAGGAGAaGGCCCugagGGACCAGa -3' miRNA: 3'- uucUCUUCUcCCGGGugaaCCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 118762 | 0.72 | 0.525123 |
Target: 5'- ----cAAGAGGGCCCugagGGACCAGa -3' miRNA: 3'- uucucUUCUCCCGGGugaaCCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 118811 | 0.73 | 0.460368 |
Target: 5'- uGAGGGAccAGAGGggccugaacgagauaGCCCAgaUGGGCCAGg -3' miRNA: 3'- -UUCUCU--UCUCC---------------CGGGUgaACCUGGUC- -5' |
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9452 | 5' | -56.2 | NC_002531.1 | + | 118877 | 0.68 | 0.746256 |
Target: 5'- uGAGAGAccAGAGgggccugaaggagaaGGCCC-CgagGGACCAGa -3' miRNA: 3'- -UUCUCU--UCUC---------------CCGGGuGaa-CCUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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