miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9452 5' -56.2 NC_002531.1 + 118423 0.68 0.711952
Target:  5'- cAGAGggGccugaAGGagauaGCCCAgaUGGGCCAGg -3'
miRNA:   3'- uUCUCuuC-----UCC-----CGGGUgaACCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 118194 0.7 0.639146
Target:  5'- aGAGGGAucugaaGGAGaaGGCCCAUgcagaccaggUGGGCCAGa -3'
miRNA:   3'- -UUCUCU------UCUC--CCGGGUGa---------ACCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 118762 0.72 0.525123
Target:  5'- ----cAAGAGGGCCCugagGGACCAGa -3'
miRNA:   3'- uucucUUCUCCCGGGugaaCCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 119020 0.72 0.525123
Target:  5'- ----cAAGAGGGCCCugagGGACCAGa -3'
miRNA:   3'- uucucUUCUCCCGGGugaaCCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 118252 0.72 0.495205
Target:  5'- --aAGGAGAaGGCCCAagUGGACCAGg -3'
miRNA:   3'- uucUCUUCUcCCGGGUgaACCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 119297 0.73 0.469918
Target:  5'- cGAGGGAccAGAGGggccugaaggagauaGCCCAgaUGGGCCAGa -3'
miRNA:   3'- -UUCUCU--UCUCC---------------CGGGUgaACCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 118811 0.73 0.460368
Target:  5'- uGAGGGAccAGAGGggccugaacgagauaGCCCAgaUGGGCCAGg -3'
miRNA:   3'- -UUCUCU--UCUCC---------------CGGGUgaACCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 119069 0.73 0.460368
Target:  5'- uGAGGGAccAGAGGggccugaaggagauaGCCCAgaUGGGCCAGg -3'
miRNA:   3'- -UUCUCU--UCUCC---------------CGGGUgaACCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 118634 0.73 0.456577
Target:  5'- -uGAGGAGAaGGCCCugagGGACCAGa -3'
miRNA:   3'- uuCUCUUCUcCCGGGugaaCCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 118045 0.73 0.437879
Target:  5'- --aAGGAGAaGGCCCAUgcGGACCAGg -3'
miRNA:   3'- uucUCUUCUcCCGGGUGaaCCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 118114 0.73 0.437879
Target:  5'- --aAGGAGAaGGCCCAUgcGGACCAGg -3'
miRNA:   3'- uucUCUUCUcCCGGGUGaaCCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 118541 0.75 0.335699
Target:  5'- gAAGaAGAcGAGGGCCC-CgagGGACCAGa -3'
miRNA:   3'- -UUC-UCUuCUCCCGGGuGaa-CCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 119532 0.81 0.143609
Target:  5'- aAGGAGAcGAGGGCCC-CgagGGACCAGa -3'
miRNA:   3'- -UUCUCUuCUCCCGGGuGaa-CCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 119711 1.07 0.002692
Target:  5'- aAAGAGAAGAGGGCCCACUUGGACCAGa -3'
miRNA:   3'- -UUCUCUUCUCCCGGGUGAACCUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.