miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
9454	3'	-55	NC_002531.1	+	98013	0.65	0.934011
	Target:  5'- uUCAGGGAuuggcgUGACCGGCucAGUAUagucaGUGCu -3' miRNA:   3'- gGGUCUCU------GCUGGCCG--UCGUAg----UACG- -5'
9454	3'	-55	NC_002531.1	+	24148	0.66	0.928847
	Target:  5'- aCCAGAGACGAU-GGUugGGCAgag-GCu -3' miRNA:   3'- gGGUCUCUGCUGgCCG--UCGUaguaCG- -5'
9454	3'	-55	NC_002531.1	+	48176	0.66	0.923439
	Target:  5'- gCCCGuuGGUGcacACCGGCAGCAUCAc-- -3' miRNA:   3'- -GGGUcuCUGC---UGGCCGUCGUAGUacg -5'
9454	3'	-55	NC_002531.1	+	49455	0.66	0.905755
	Target:  5'- gCCCAGAGGCucGCUGGCuauGCGgccacCAgcUGCa -3' miRNA:   3'- -GGGUCUCUGc-UGGCCGu--CGUa----GU--ACG- -5'
9454	3'	-55	NC_002531.1	+	74360	0.66	0.905755
	Target:  5'- gUCAGcAGACGACCacauacGGCAGC--UAUGUg -3' miRNA:   3'- gGGUC-UCUGCUGG------CCGUCGuaGUACG- -5'
9454	3'	-55	NC_002531.1	+	130172	0.67	0.88592
	Target:  5'- gCCgGGGGAgGuCCGGgGGCAccugaggaaguUUAUGCa -3' miRNA:   3'- -GGgUCUCUgCuGGCCgUCGU-----------AGUACG- -5'
9454	3'	-55	NC_002531.1	+	91357	0.69	0.794046
	Target:  5'- cCCCcGGGACuuaaccgccuuauaGGCCGGCAGCugcucguaCAUGUa -3' miRNA:   3'- -GGGuCUCUG--------------CUGGCCGUCGua------GUACG- -5'
9454	3'	-55	NC_002531.1	+	83394	0.7	0.746635
	Target:  5'- aCCCAggcGAGGCGAgCUGGCGGCcuucuacguucugcaCGUGCa -3' miRNA:   3'- -GGGU---CUCUGCU-GGCCGUCGua-------------GUACG- -5'
9454	3'	-55	NC_002531.1	+	45809	0.71	0.699713
	Target:  5'- uUCUAGAGACGGggUUGGCuGCAUCcUGUa -3' miRNA:   3'- -GGGUCUCUGCU--GGCCGuCGUAGuACG- -5'
9454	3'	-55	NC_002531.1	+	121689	1.13	0.00172
	Target:  5'- uCCCAGAGACGACCGGCAGCAUCAUGCu -3' miRNA:   3'- -GGGUCUCUGCUGGCCGUCGUAGUACG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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