miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9455 5' -52 NC_002531.1 + 12469 0.66 0.969229
Target:  5'- cUAGCcuacGCGGcCGCCUUCUCCCc- -3'
miRNA:   3'- aAUUGucu-CGUCuGUGGAAGAGGGac -5'
9455 5' -52 NC_002531.1 + 10197 0.66 0.965954
Target:  5'- -aGACGGGGCcgggucagggAGAauuGCCcguUUCUCCCUGg -3'
miRNA:   3'- aaUUGUCUCG----------UCUg--UGG---AAGAGGGAC- -5'
9455 5' -52 NC_002531.1 + 84706 0.66 0.96244
Target:  5'- ---cCAGuGCAGcACACC-UCUCCCc- -3'
miRNA:   3'- aauuGUCuCGUC-UGUGGaAGAGGGac -5'
9455 5' -52 NC_002531.1 + 51931 0.67 0.950409
Target:  5'- -aGAUAGAGgGGGCACaacaCUCCCUu -3'
miRNA:   3'- aaUUGUCUCgUCUGUGgaa-GAGGGAc -5'
9455 5' -52 NC_002531.1 + 63246 0.67 0.941099
Target:  5'- aUAGCAGAGCccAGugACCUcacgUUUCCUa- -3'
miRNA:   3'- aAUUGUCUCG--UCugUGGA----AGAGGGac -5'
9455 5' -52 NC_002531.1 + 103201 0.68 0.906768
Target:  5'- -gGGgGGAGCGGACaguaACCUUUUCCUg- -3'
miRNA:   3'- aaUUgUCUCGUCUG----UGGAAGAGGGac -5'
9455 5' -52 NC_002531.1 + 89292 0.69 0.863016
Target:  5'- cUGGCAGuGCAGGCagGCCUcagaggucUCUCCCc- -3'
miRNA:   3'- aAUUGUCuCGUCUG--UGGA--------AGAGGGac -5'
9455 5' -52 NC_002531.1 + 84958 0.69 0.863016
Target:  5'- -gGGCAGAGUaAGGCugUggUCUCCUUGa -3'
miRNA:   3'- aaUUGUCUCG-UCUGugGa-AGAGGGAC- -5'
9455 5' -52 NC_002531.1 + 53500 0.7 0.85487
Target:  5'- cUGGCAGAGCAG-UACCUUgUCUUUa -3'
miRNA:   3'- aAUUGUCUCGUCuGUGGAAgAGGGAc -5'
9455 5' -52 NC_002531.1 + 93231 0.7 0.85487
Target:  5'- ---uUAGAGCAGugGaCCaUCUCCCUu -3'
miRNA:   3'- aauuGUCUCGUCugU-GGaAGAGGGAc -5'
9455 5' -52 NC_002531.1 + 74667 0.7 0.810908
Target:  5'- ---cCAGcAGCAGGCACCUgcacCUCCCc- -3'
miRNA:   3'- aauuGUC-UCGUCUGUGGAa---GAGGGac -5'
9455 5' -52 NC_002531.1 + 121879 1.07 0.005944
Target:  5'- uUUAACAGAGCAGACACCUUCUCCCUGg -3'
miRNA:   3'- -AAUUGUCUCGUCUGUGGAAGAGGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.