Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 9456 | 3' | -51.6 | NC_002531.1 | + | 4363 | 0.66 | 0.97933 |
|
Target: 5'- gCCuGGACAAAcuGUGGCCgGUGCaUgGCGg -3' miRNA: 3'- -GGuCUUGUUU--CACCGG-CACG-AgUGUa -5' |
|||||||
| 9456 | 3' | -51.6 | NC_002531.1 | + | 123837 | 0.67 | 0.964961 |
|
Target: 5'- aCCAGAAacuGAGUGGuuGUGCa----- -3' miRNA: 3'- -GGUCUUgu-UUCACCggCACGagugua -5' |
|||||||
| 9456 | 3' | -51.6 | NC_002531.1 | + | 108506 | 0.68 | 0.944719 |
|
Target: 5'- cCCAGGACAgauGAGUGGCCGUauggGgaCAa-- -3' miRNA: 3'- -GGUCUUGU---UUCACCGGCA----CgaGUgua -5' |
|||||||
| 9456 | 3' | -51.6 | NC_002531.1 | + | 92810 | 0.68 | 0.939907 |
|
Target: 5'- cCCAGAACAAGGUGGacuuauagaauUUGUGaCUaCACAc -3' miRNA: 3'- -GGUCUUGUUUCACC-----------GGCAC-GA-GUGUa -5' |
|||||||
| 9456 | 3' | -51.6 | NC_002531.1 | + | 19023 | 0.68 | 0.934833 |
|
Target: 5'- aUAGAGCugaagaguGUGGCCacacUGCUCACAg -3' miRNA: 3'- gGUCUUGuuu-----CACCGGc---ACGAGUGUa -5' |
|||||||
| 9456 | 3' | -51.6 | NC_002531.1 | + | 69014 | 0.75 | 0.592864 |
|
Target: 5'- cCCuGGAUAAAGUGGCCGUguGCUUugGc -3' miRNA: 3'- -GGuCUUGUUUCACCGGCA--CGAGugUa -5' |
|||||||
| 9456 | 3' | -51.6 | NC_002531.1 | + | 122142 | 1.08 | 0.006204 |
|
Target: 5'- uCCAGAACAAAGUGGCCGUGCUCACAUg -3' miRNA: 3'- -GGUCUUGUUUCACCGGCACGAGUGUA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home