miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9457 5' -45.6 NC_002531.1 + 20268 0.66 0.999934
Target:  5'- aUCUGuUCAAGGCcacUGGCCagacugcGCAUGGCc -3'
miRNA:   3'- aAGAC-AGUUCUGu--AUCGGa------UGUAUUG- -5'
9457 5' -45.6 NC_002531.1 + 109829 0.67 0.999454
Target:  5'- ---cGUUAGGACcagGGCCUAgGUGGCc -3'
miRNA:   3'- aagaCAGUUCUGua-UCGGAUgUAUUG- -5'
9457 5' -45.6 NC_002531.1 + 58265 0.67 0.999454
Target:  5'- ---gGUCAacAGAC-UAGCCUACcUGACu -3'
miRNA:   3'- aagaCAGU--UCUGuAUCGGAUGuAUUG- -5'
9457 5' -45.6 NC_002531.1 + 122610 0.68 0.999214
Target:  5'- uUUCUGgcCAcgaugugagcgacggAGGCcucGUGGCCUGCGUGGCg -3'
miRNA:   3'- -AAGACa-GU---------------UCUG---UAUCGGAUGUAUUG- -5'
9457 5' -45.6 NC_002531.1 + 130243 0.68 0.998935
Target:  5'- aUCUGUCugcAGuCAUGGUUUACAUcACa -3'
miRNA:   3'- aAGACAGu--UCuGUAUCGGAUGUAuUG- -5'
9457 5' -45.6 NC_002531.1 + 98137 0.69 0.996595
Target:  5'- gUUCUGUgGAuGugAUgcuGGCCUACGUGAa -3'
miRNA:   3'- -AAGACAgUU-CugUA---UCGGAUGUAUUg -5'
9457 5' -45.6 NC_002531.1 + 8875 0.73 0.965059
Target:  5'- uUUCUGUCGggGGGCAUAugCUGCAUGGCu -3'
miRNA:   3'- -AAGACAGU--UCUGUAUcgGAUGUAUUG- -5'
9457 5' -45.6 NC_002531.1 + 122408 1.08 0.021822
Target:  5'- gUUCUGUCAAGACAUAGCCUACAUAACu -3'
miRNA:   3'- -AAGACAGUUCUGUAUCGGAUGUAUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.