Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9457 | 5' | -45.6 | NC_002531.1 | + | 20268 | 0.66 | 0.999934 |
Target: 5'- aUCUGuUCAAGGCcacUGGCCagacugcGCAUGGCc -3' miRNA: 3'- aAGAC-AGUUCUGu--AUCGGa------UGUAUUG- -5' |
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9457 | 5' | -45.6 | NC_002531.1 | + | 109829 | 0.67 | 0.999454 |
Target: 5'- ---cGUUAGGACcagGGCCUAgGUGGCc -3' miRNA: 3'- aagaCAGUUCUGua-UCGGAUgUAUUG- -5' |
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9457 | 5' | -45.6 | NC_002531.1 | + | 58265 | 0.67 | 0.999454 |
Target: 5'- ---gGUCAacAGAC-UAGCCUACcUGACu -3' miRNA: 3'- aagaCAGU--UCUGuAUCGGAUGuAUUG- -5' |
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9457 | 5' | -45.6 | NC_002531.1 | + | 122610 | 0.68 | 0.999214 |
Target: 5'- uUUCUGgcCAcgaugugagcgacggAGGCcucGUGGCCUGCGUGGCg -3' miRNA: 3'- -AAGACa-GU---------------UCUG---UAUCGGAUGUAUUG- -5' |
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9457 | 5' | -45.6 | NC_002531.1 | + | 130243 | 0.68 | 0.998935 |
Target: 5'- aUCUGUCugcAGuCAUGGUUUACAUcACa -3' miRNA: 3'- aAGACAGu--UCuGUAUCGGAUGUAuUG- -5' |
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9457 | 5' | -45.6 | NC_002531.1 | + | 98137 | 0.69 | 0.996595 |
Target: 5'- gUUCUGUgGAuGugAUgcuGGCCUACGUGAa -3' miRNA: 3'- -AAGACAgUU-CugUA---UCGGAUGUAUUg -5' |
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9457 | 5' | -45.6 | NC_002531.1 | + | 8875 | 0.73 | 0.965059 |
Target: 5'- uUUCUGUCGggGGGCAUAugCUGCAUGGCu -3' miRNA: 3'- -AAGACAGU--UCUGUAUcgGAUGUAUUG- -5' |
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9457 | 5' | -45.6 | NC_002531.1 | + | 122408 | 1.08 | 0.021822 |
Target: 5'- gUUCUGUCAAGACAUAGCCUACAUAACu -3' miRNA: 3'- -AAGACAGUUCUGUAUCGGAUGUAUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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