miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9458 3' -58.8 NC_002531.1 + 36544 0.66 0.753194
Target:  5'- uGCUCaAAGGCUgcacccaacaGUGCcuUCaagugcaGuCGCCUGCCg -3'
miRNA:   3'- -CGAG-UUCCGG----------UACG--AGg------C-GCGGACGG- -5'
9458 3' -58.8 NC_002531.1 + 68226 0.66 0.724025
Target:  5'- uGCU-AAGGCgauagGUGUUgCGCGCCaGCCa -3'
miRNA:   3'- -CGAgUUCCGg----UACGAgGCGCGGaCGG- -5'
9458 3' -58.8 NC_002531.1 + 45575 0.67 0.708164
Target:  5'- cGCUCAuGGCCccagaGCUgacauucuacacaugCCGCGCCgcgcgucGCCu -3'
miRNA:   3'- -CGAGUuCCGGua---CGA---------------GGCGCGGa------CGG- -5'
9458 3' -58.8 NC_002531.1 + 7756 0.67 0.66381
Target:  5'- aGCUgccgaAGGGCCuggugaaguauGUGUg-CGUGCCUGCCg -3'
miRNA:   3'- -CGAg----UUCCGG-----------UACGagGCGCGGACGG- -5'
9458 3' -58.8 NC_002531.1 + 36003 0.68 0.643441
Target:  5'- --cCAGGGCUcuaCUUCGgGCCUGCCc -3'
miRNA:   3'- cgaGUUCCGGuacGAGGCgCGGACGG- -5'
9458 3' -58.8 NC_002531.1 + 43397 0.68 0.640381
Target:  5'- uCUUAAGGCCuUGCUCCauucuuuagccuugGCGCaccCUGCa -3'
miRNA:   3'- cGAGUUCCGGuACGAGG--------------CGCG---GACGg -5'
9458 3' -58.8 NC_002531.1 + 82357 0.69 0.542269
Target:  5'- aGCUCGGGGCCGUGgccacgcaguCUCCaGC-CCUGgaCCg -3'
miRNA:   3'- -CGAGUUCCGGUAC----------GAGG-CGcGGAC--GG- -5'
9458 3' -58.8 NC_002531.1 + 54414 0.71 0.437852
Target:  5'- gGUUCAcuaGGGCg--GUUCggCGCGCCUGCCg -3'
miRNA:   3'- -CGAGU---UCCGguaCGAG--GCGCGGACGG- -5'
9458 3' -58.8 NC_002531.1 + 20265 0.72 0.394321
Target:  5'- uGUUCAAGGCCAcugGCcagaCUGCGCaugGCCg -3'
miRNA:   3'- -CGAGUUCCGGUa--CGa---GGCGCGga-CGG- -5'
9458 3' -58.8 NC_002531.1 + 42718 0.74 0.323379
Target:  5'- -aUCcAGGCCuAUGCagaGCGCCUGCCa -3'
miRNA:   3'- cgAGuUCCGG-UACGaggCGCGGACGG- -5'
9458 3' -58.8 NC_002531.1 + 57205 0.78 0.164467
Target:  5'- uGCUCAAGGUCAUcaGCaacCCcCGCCUGCCg -3'
miRNA:   3'- -CGAGUUCCGGUA--CGa--GGcGCGGACGG- -5'
9458 3' -58.8 NC_002531.1 + 122987 1.14 0.000561
Target:  5'- aGCUCAAGGCCAUGCUCCGCGCCUGCCg -3'
miRNA:   3'- -CGAGUUCCGGUACGAGGCGCGGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.